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CAZyme Information: MGYG000000967_00061
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UMGS1441 sp900543365 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; UMGS1441; UMGS1441 sp900543365 | |||||||||||
| CAZyme ID | MGYG000000967_00061 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 15943; End: 19278 Strand: + | |||||||||||
Full Sequence Download help
| MKKCLKKAIS GILTASMLFS SVVFVPTSAS VAVAATTGAF STVGGWNETL YAEWADQNPD | 60 |
| DTAVKVGYKL SSDVNYTYLS GNDYTYLVRP LNASLGRVDI PGLKAGTYDL EVTSSDGTVY | 120 |
| TKTGIEVTAN DRSGYAHWKY SEGVGAYNND GTPKDNAIIV YVTNENKDTV EVPGYEGKTW | 180 |
| SYTPSSSSPY TRDGVGVGNI LNNNMKLVQE ITITDNHPII FRFIGKVNAP KNLTPYNTKD | 240 |
| PILGGAKGDN GNLAITKYAR NITIEGIGSD ATIDGWGFTF SQSGTCPTEA GKSFEVRNLT | 300 |
| FKNYPEDALG FQGDDEIASP IERVWVHNNV FYPGYCANPA ESDKKEGDGS CDFKRGQFYT | 360 |
| MSYNHYIGCH KTNLLGAGAS DNQYYMTLHH NWYEKVGSRQ PLMAGGNVHI YNTYFQGATD | 420 |
| TTVDARGSNA VFLENNYYDS CKNYYKSRNN TCIAKSYNET FNSGSIGSIS GKRTVATSRE | 480 |
| QSAIADNGLN FPDGTSMKDF DTNTSQFYYD VANKKSDVQI LNATADVPNY VKAHAGVLSV | 540 |
| GTDTEDNTEV TTSNSEGSTE TTTSSTPVTP STGDSVKTFE NGVDSTYYTI VGSTSNSKGS | 600 |
| VSYNGATYSN CLKMESKTNI QFTPKNNGVL TLVFGGTTVA AGKSVKINGT AYKVNDNGIV | 660 |
| TVEVAAGTTY TVTKGDSINL FYMAVAEEGG EATTEATTET TTKTVETTTK ATTEATTEAT | 720 |
| TKATTETTTK EPTSETTTEA TVPDPTPSTG LVAGSYTLVK GMQAVEGLDT SNARSLDSEG | 780 |
| AKVRSDSFIT VTPAVNGTVA LTWTNKAPAV KAVVNGAETD VVLNSTASVS TFEVTAGVTY | 840 |
| KVYGSQAGSN TTITNLVLAK SATPSESSSS STSTTEATTE ATTKATTEAT TEATTEATTE | 900 |
| ATTETQTPVS GVNIAVDSVN AKVGTQVTIP VRVTDLTSLA SLDVNVAFDA GKVTVNSVSN | 960 |
| GNVVTDSNAA LSYNVANGTV GVAIANPAET IANGDILFNL VVTPTAEGTA TFTVTVDEAY | 1020 |
| ATEGKTIEIT TIDGTATITK ADPVGPTIVK GDADKNGLVE KNDVTTILNY VAGIISSTEI | 1080 |
| DTEAADVNED SNVTTRDAYL IQKYLNVGSW N | 1111 |
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 245 | 439 | 2.2e-36 | 0.8762376237623762 |
| CBM77 | 581 | 681 | 3.3e-28 | 0.9223300970873787 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam18283 | CBM77 | 8.97e-31 | 573 | 683 | 1 | 108 | Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan. |
| COG3866 | PelB | 3.80e-24 | 261 | 443 | 102 | 278 | Pectate lyase [Carbohydrate transport and metabolism]. |
| smart00656 | Amb_all | 3.59e-17 | 261 | 442 | 17 | 190 | Amb_all domain. |
| cd08548 | Type_I_cohesin_like | 2.78e-11 | 912 | 1035 | 1 | 134 | Type I cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I cohesins; their interactions with dockerin mediate assembly of a range of dockerin-borne enzymes to the complex. |
| cd14256 | Dockerin_I | 4.46e-11 | 1050 | 1106 | 1 | 57 | Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BBF42492.1 | 3.23e-150 | 3 | 538 | 2 | 502 |
| ACR71161.1 | 1.32e-101 | 1 | 683 | 1 | 890 |
| ADU23076.1 | 4.76e-98 | 44 | 553 | 762 | 1252 |
| CDR31241.1 | 1.96e-92 | 44 | 537 | 334 | 806 |
| ACX62589.1 | 1.26e-71 | 44 | 683 | 43 | 680 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5FU5_A | 1.90e-20 | 570 | 686 | 3 | 114 | Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens] |
| 3VMV_A | 1.53e-19 | 260 | 440 | 79 | 248 | Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
| 1AIR_A | 2.02e-15 | 217 | 448 | 50 | 267 | ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi] |
| 2EWE_A | 4.85e-15 | 217 | 448 | 50 | 267 | ChainA, Pectate lyase C [Dickeya chrysanthemi] |
| 1VBL_A | 1.89e-13 | 261 | 536 | 133 | 411 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0C1C3 | 1.26e-17 | 239 | 448 | 89 | 288 | Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1 |
| P0C1C2 | 4.05e-17 | 217 | 448 | 71 | 288 | Pectate lyase 3 OS=Pectobacterium carotovorum OX=554 GN=pel3 PE=1 SV=1 |
| Q6CZT2 | 5.43e-17 | 191 | 448 | 30 | 288 | Pectate lyase 3 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=pel3 PE=3 SV=1 |
| Q8GCB2 | 8.82e-17 | 257 | 442 | 105 | 276 | Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1 |
| Q65DC2 | 8.82e-17 | 257 | 442 | 105 | 276 | Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000364 | 0.998814 | 0.000179 | 0.000246 | 0.000193 | 0.000170 |
