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CAZyme Information: MGYG000004838_00885
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | RUG023 sp900315435 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Spirochaetota; Spirochaetia; Sphaerochaetales; Sphaerochaetaceae; RUG023; RUG023 sp900315435 | |||||||||||
| CAZyme ID | MGYG000004838_00885 | |||||||||||
| CAZy Family | PL11 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 905; End: 2743 Strand: - | |||||||||||
Full Sequence Download help
| MVTDPALDGR HCMEQQRIAA PGLKKAVPVL RAGETDWKDY TVTVELRPAI DSQISGIAFR | 60 |
| YQTSMMHYGF FLVKGGVELH RVNKLERTVI ANAALSWSTD EFHTLSVTVK GNHFSCFLDG | 120 |
| TLVMEATDET WKEGCIALSA SIPTQYRSVV VTMPEGAWKE LEACRAAHSE AVKRKAATYP | 180 |
| KAKLWKTIDL KDFGGGRQIR FGHLTGTKET FFVICQNQRR VYKDRYPFIS CMTAVSFDTG | 240 |
| NVLWQIGEPN KKDDTTMLTT DLPFQVYDIN GDGKDEVICS WDSQLMVLEG ATGNVLKRMP | 300 |
| TPLNDQDPAT VTGLEFGTYA SSRLNVDAIR IVNVSGNKRP SDILIKDRYS RIWIYDKDFH | 360 |
| PLWKFSHYNT GHFPYNYDFD GDGKDEIFSC YNMIDHDGKL LWSLPITVDH TDEIIVGRFN | 420 |
| PDDPDEEIAI VSGWEGFMIL DKHGTILKRD INGHAQRISI GNYLPERRGL EICTTTYWGN | 480 |
| NAIIYMHDCK GNELWHKELL CNGNIITPVN WDGSGTDLIL LNGDVTHGGL VDGNGDVMVR | 540 |
| LPDDGHPTLC SEVLDVTGDS RPEILCWDNK RLCIYTQDGE AKPNRKGVYD PEGYAVYNAS | 600 |
| NYRGEFSFPR WR | 612 |
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL11 | 285 | 582 | 2.6e-23 | 0.5016501650165016 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd10318 | RGL11 | 5.14e-10 | 263 | 576 | 177 | 527 | Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QQO10816.1 | 2.55e-279 | 1 | 608 | 57 | 660 |
| ADY12054.1 | 1.02e-265 | 1 | 611 | 58 | 666 |
| AGC68608.1 | 4.76e-252 | 8 | 612 | 65 | 667 |
| ANW98952.1 | 4.76e-252 | 8 | 612 | 65 | 667 |
| ANX01481.1 | 4.76e-252 | 8 | 612 | 65 | 667 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4CAG_A | 2.28e-06 | 264 | 576 | 188 | 536 | Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis] |
| 2ZUY_A | 5.31e-06 | 264 | 576 | 185 | 550 | Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis] |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.998752 | 0.001228 | 0.000044 | 0.000002 | 0.000001 | 0.000005 |