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CAZyme Information: MGYG000002886_00121

You are here: Home > Sequence: MGYG000002886_00121

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Stenotrophomonas maltophilia
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia
CAZyme ID MGYG000002886_00121
CAZy Family PL17
CAZyme Description Alginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
742 MGYG000002886_2|CGC1 82502.09 7.1411
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002886 4276654 MAG United States North America
Gene Location Start: 44920;  End: 47148  Strand: -

Full Sequence      Download help

MRLQPLFVSL  ALAAPFALLP  TASLLAAPAA  AARQADTAPV  LVTAAHWQQM  ASEGRRYPWF60
AKEQARTEAT  LKKMMKAGID  VPVPRDKGGG  RTHEQHKRNY  QALLAAGTLY  RLTGDRTYVD120
YARDMLLQYA  ELYPTLGPHP  EGRGQIPGRV  FWQVLNDSVW  LVNAIQGYDA  IRDALSAEDR180
DTIESKVFRP  MAEFLVSEPK  NYDQIHNHAT  WAVAATGMTG  YVLRDQELVE  KSLRGSQKDD240
KFGFLRQIDL  LFSPDGYYEE  GPYYQRYALA  PFLLFASAIE  RNEPQRKIFA  RRDGVLLKAV300
DVLVQSSYGG  LFFPINDAIL  DKGIDTEELV  AGIGIAYART  GDDRLLSVAQ  QQKRLLLSPE360
GLQVAQALAA  NKAKPFDYRP  MLLRDGPDGD  RGGLAILRMN  GERGQALVQK  DTMQGMGHGH420
FDKLNWLFYD  NGNPVVTDYG  AARFLNVEAK  RGGIYLAENR  SWAKQTVAHN  TLVVDEQSHF480
NGDWKRGEAH  APQVRFFQAD  ADTQIASATM  RDAYPGVAFT  RTQALLRHPD  LGLPVVLDLL540
QVHGDKAARY  DLPLHFNGHI  VTTGFEAEHF  PSQRPVLGKD  NGYQHLWLDA  RSKPGSEPRS600
LAWLLDGRFY  TYRFGSSAPA  QALLVESGAN  DPEFNLRREP  ALLQRVDGHK  DVTFFSVLEP660
HGEYNGTAEY  VHGADSRIRE  IVRTRGSDAE  VIELRLASGA  RIALGVADDS  SAKGEHSVTV720
DGHVYRWNGS  HARLDRSKGD  GK742

Enzyme Prediction      help

EC 4.2.2.- 4.2.2.3

CAZyme Signature Domains help

Created with Snap3774111148185222259296333371408445482519556593630667704392528PL17191273PL17
Family Start End Evalue family coverage
PL17 392 528 2.6e-56 0.9784172661870504
PL17 191 273 1e-24 0.6616541353383458

CDD Domains      download full data without filtering help

Created with Snap3774111148185222259296333371408445482519556593630667704381649Hepar_II_III89307Alginate_lyase
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07940 Hepar_II_III 2.28e-21 381 649 1 224
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam05426 Alginate_lyase 2.02e-18 89 307 40 268
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits      help

Created with Snap37741111481852222592963333714084454825195565936306677041742QJP19941.1|PL17_21742AYZ70262.1|PL17_21742QGL72063.1|PL17_21742SQG67683.1|PL17_21742QNG68447.1|PL17_2
Hit ID E-Value Query Start Query End Hit Start Hit End
QJP19941.1 0.0 1 742 1 742
AYZ70262.1 0.0 1 742 1 742
QGL72063.1 0.0 1 742 1 742
SQG67683.1 0.0 1 742 1 742
QNG68447.1 0.0 1 742 1 742

PDB Hits      download full data without filtering help

Created with Snap3774111148185222259296333371408445482519556593630667704227384NEI_A227384OJZ_A227384OK4_A407297BJT_A407297BM6_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4NEI_A 1.72e-256 22 738 14 736
Alg17cPL17 Family Alginate Lyase [Saccharophagus degradans 2-40],4NEI_B Alg17c PL17 Family Alginate Lyase [Saccharophagus degradans 2-40]
4OJZ_A 3.97e-255 22 738 14 736
CrystalStructure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OJZ_B Crystal Structure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OK2_A Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40],4OK2_B Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40]
4OK4_A 7.96e-255 22 738 14 736
CrystalStructure of Alg17c Mutant H202L [Saccharophagus degradans 2-40],4OK4_B Crystal Structure of Alg17c Mutant H202L [Saccharophagus degradans 2-40]
7BJT_A 1.07e-191 40 729 31 743
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BJT_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
7BM6_A 2.40e-190 40 729 31 743
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BM6_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]

Swiss-Prot Hits      download full data without filtering help

Created with Snap37741111481852222592963333714084454825195565936306677041742sp|B2FSW8|EALGL_STRMK22738sp|Q21FJ0|EALGL_SACD2
Hit ID E-Value Query Start Query End Hit Start Hit End Description
B2FSW8 0.0 1 742 1 742
Alginate lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt2602 PE=1 SV=1
Q21FJ0 9.44e-256 22 738 14 736
Exo-oligoalginate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=alg17C PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000943 0.997970 0.000246 0.000368 0.000220 0.000193

TMHMM  Annotations      download full data without filtering help

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