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CAZyme Information: MGYG000002458_00098

You are here: Home > Sequence: MGYG000002458_00098

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia aleksiciae
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia aleksiciae
CAZyme ID MGYG000002458_00098
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
388 MGYG000002458_1|CGC2 44355.64 5.1412
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002458 4525402 Isolate Finland Europe
Gene Location Start: 105921;  End: 107087  Strand: -

Full Sequence      Download help

MAKGKQIPLT  FHTYQDASTG  AQVTRLTPPD  VTCHRNYFYQ  KCFTRDGSKL  LFGGAFDGPW60
NYYLLDLNTR  VATQLTEGRG  DNTFGGFLSP  DDDALFYVKD  GRNLMRVSLD  TLEESVVYQV120
PEEWVGYGTW  VANSDCTKLV  GIEIKREDWQ  PLTDWKKFHE  FYFTKPCCRL  MRVDLKTGES180
AVILQENQWL  GHPIYRPYDD  NTVAFCHEGP  HDLVDARMWL  INEDGSNMRK  VKTHAEGESC240
THEFWVPDGS  ALVYVSYLKS  SPDRFIYSAD  PETLENRQLT  KMPACSHLMS  NYDGTLLVGD300
GSDAPVDVQD  DSGYKIENDP  FLYVFNLKNG  TQHRVARHDT  SWKVFEGDRQ  VTHPHPSFTP360
DDKQVLFTSD  VHGKPALYLV  TLPESVWQ388

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Created with Snap1938587797116135155174194213232252271291310329349368215383PL2232147PL22
Family Start End Evalue family coverage
PL22 215 383 1.8e-82 0.6339622641509434
PL22 32 147 2.4e-31 0.42641509433962266

CDD Domains      download full data without filtering help

Created with Snap19385877971161351551741942132322522712913103293493681386Pectate_lyase221387TolB197378tolB245382tolB245383tolB
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 1 386 1 386
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 1.09e-72 1 387 58 425
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK05137 tolB 4.71e-08 197 378 162 317
Tol-Pal system protein TolB.
PRK04792 tolB 7.25e-08 245 382 225 337
Tol-Pal system protein TolB.
PRK00178 tolB 2.69e-07 245 383 206 319
Tol-Pal system protein TolB.

CAZyme Hits      help

Created with Snap19385877971161351551741942132322522712913103293493681388QKJ04130.1|PL22_11388QDW33593.1|PL22_11388QKJ08060.1|PL22_11388QKJ12804.1|PL22_11388AVX38017.1|PL22_1
Hit ID E-Value Query Start Query End Hit Start Hit End
QKJ04130.1 1.82e-304 1 388 1 388
QDW33593.1 1.01e-301 1 388 1 388
QKJ08060.1 1.01e-301 1 388 1 388
QKJ12804.1 1.44e-301 1 388 1 388
AVX38017.1 1.44e-301 1 388 1 388

PDB Hits      download full data without filtering help

Created with Snap193858779711613515517419421323225227129131032934936813883PE7_A23853C5M_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 1.33e-296 1 388 1 388
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 9.53e-207 2 385 2 385
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Created with Snap19385877971161351551741942132322522712913103293493681387sp|Q59418|OGL_PECAS1388sp|P21258|OGL_DICD3
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q59418 1.87e-257 1 387 1 387
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2
P21258 2.54e-255 1 388 1 388
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000040 0.000010 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002458_00098.