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CAZyme Information: MGYG000002885_00167

You are here: Home > Sequence: MGYG000002885_00167

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_E juntendi
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E juntendi
CAZyme ID MGYG000002885_00167
CAZy Family PL5
CAZyme Description Alginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
367 MGYG000002885_8|CGC1 41232.88 9.4389
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002885 3148284 MAG United States North America
Gene Location Start: 16390;  End: 17493  Strand: +

Full Sequence      Download help

MTVFKQIFRP  ALLAMALFGS  AAHAALVPPQ  GYYEGIEKPK  TGDGNFRCEP  APKPYTGALQ60
FRSKYEGSDK  ARATLNVASE  KAFRKSTEDI  TTLEKGVSKM  VGQYMRDGRP  AQLDCTLAWL120
GTWARANALL  STDYNHTGKS  MRKWALGSMS  GSWLRLKFST  AQPLAAHQAE  AELIEKWLDR180
LAEQTVQDWS  NLPLEKINNH  SYWAAWSVMA  TAVATDRRDL  FDWAVKEFKV  GANQVDEQGF240
LPNEVKRKQR  ALAYHNYALP  PLAMIASFAQ  ANGVDLRSEN  NFALQRLGEG  VLYGARDPRH300
FAERAGEKQD  MKDLKVDNKY  AWLEPWCALY  HCVGDTLERK  HGMQPFNSFR  LGGDLTRVYD360
PSAASKK367

Enzyme Prediction      help

EC 4.2.2.3

CAZyme Signature Domains help

Created with Snap183655739111012814616518320122023825627529331133034824341PL5
Family Start End Evalue family coverage
PL5 24 341 8e-175 0.9968354430379747

CDD Domains      download full data without filtering help

Created with Snap18365573911101281461651832012202382562752933113303484363algL22359AlgLyase60301Alginate_lyase
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00325 algL 0.0 4 363 1 359
polysaccharide lyase.
cd00244 AlgLyase 0.0 22 359 3 339
Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
pfam05426 Alginate_lyase 3.46e-58 60 301 1 274
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits      help

Created with Snap18365573911101281461651832012202382562752933113303481367QOH71437.1|PL5_11367QDR69980.1|PL5_11367QKL03665.1|PL5_11367QEQ89546.1|PL5_11367QXI34543.1|PL5_1
Hit ID E-Value Query Start Query End Hit Start Hit End
QOH71437.1 4.82e-278 1 367 1 367
QDR69980.1 9.72e-278 1 367 1 367
QKL03665.1 9.72e-278 1 367 1 367
QEQ89546.1 6.56e-276 1 367 1 367
QXI34543.1 2.71e-259 1 367 1 367

PDB Hits      download full data without filtering help

Created with Snap1836557391110128146165183201220238256275293311330348243594OZV_A243594OZW_A503567FHZ_A503567FHU_A503567FI2_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4OZV_A 3.18e-166 24 359 1 334
CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1]
4OZW_A 1.05e-164 24 359 1 334
CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1]
7FHZ_A 8.79e-49 50 356 3 297
ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a]
7FHU_A 1.05e-48 50 356 3 297
ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a]
7FI2_A 3.13e-47 50 356 3 297
ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a]

Swiss-Prot Hits      download full data without filtering help

Created with Snap18365573911101281461651832012202382562752933113303481367sp|B0KGQ9|ALGL_PSEPG1367sp|Q88ND1|ALGL_PSEPK1367sp|A5W8V4|ALGL_PSEP11367sp|B1J479|ALGL_PSEPW1367sp|Q1I563|ALGL_PSEE4
Hit ID E-Value Query Start Query End Hit Start Hit End Description
B0KGQ9 2.03e-255 1 367 1 367
Alginate lyase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=algL PE=3 SV=1
Q88ND1 1.12e-253 1 367 5 371
Alginate lyase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=algL PE=3 SV=1
A5W8V4 2.76e-253 1 367 1 367
Alginate lyase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=algL PE=3 SV=1
B1J479 6.49e-252 1 367 1 367
Alginate lyase OS=Pseudomonas putida (strain W619) OX=390235 GN=algL PE=3 SV=1
Q1I563 3.51e-240 1 367 1 367
Alginate lyase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=algL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000299 0.999034 0.000171 0.000179 0.000154 0.000149

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002885_00167.