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CAZyme Information: MGYG000003403_00094

You are here: Home > Sequence: MGYG000003403_00094

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Stenotrophomonas maltophilia_AM
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia_AM
CAZyme ID MGYG000003403_00094
CAZy Family PL6
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
479 MGYG000003403_1|CGC2 50324.9 7.0139
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003403 4562306 MAG United States North America
Gene Location Start: 99963;  End: 101402  Strand: +

Full Sequence      Download help

MRTHPLACHR  SNNSWLFCLT  TGLALCLTTS  AASAASWLVH  DAAEFATAAS  ALQPGDEIVL60
ADGTWTDARL  LLKGQGTAAA  PITLRAQTPG  NVILSGRSDL  RLAGSYLQVS  NLVFRNGYTP120
GDAVVAFRES  SKAVASHSRV  TGLVIDDYAN  PDASDQDYWV  SFYGSHNRLD  HSQLRGKTNA180
GPTVVVVRDA  TQGLDNQHRI  DHNWFGPRPA  LGVNGGETIR  VGTSDSSLSD  SNSTVENNWF240
EGCDGETEII  SNKSGGNTYR  GNVFYRSAGA  LTLRHGNSNR  VIDNVFLGDD  KVGTGGVRII300
NADQIVSNNY  FERLAGSSNR  SALAVMDAQA  SPPLSGYAPV  VNATISRNTF  VDVAKISFGV360
GHDEAKGIVV  AASDSRFSAN  LIVNRSSRNP  PNAASSLAGI  AFSGNVQSPT  ASTVFPGGVE420
GRGVILQQAA  SGLWVPTPAL  PAVGADPALA  MTAREATGVA  WYPKVGEVAL  SRTRNGVDR479

Enzyme Prediction      help

EC 4.2.2.-

CAZyme Signature Domains help

Created with Snap2347719511914316719121523926328731133535938340743145537410PL6
Family Start End Evalue family coverage
PL6 37 410 2.1e-139 0.9919354838709677

CDD Domains      download full data without filtering help

Created with Snap2347719511914316719121523926328731133535938340743145552410PL-652437Chondroitinas_B
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd14251 PL-6 1.73e-163 52 410 14 369
Polysaccharide Lyase Family 6. Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate.
pfam14592 Chondroitinas_B 2.24e-124 52 437 14 411
Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate.

CAZyme Hits      help

Created with Snap234771951191431671912152392632873113353593834074314551479QGL93067.1|PL6_11479QPX92187.1|PL6_11479SQG10689.1|PL6_11479QJC74620.1|PL6_11479SNW10357.1|PL6_1
Hit ID E-Value Query Start Query End Hit Start Hit End
QGL93067.1 0.0 1 479 1 479
QPX92187.1 0.0 1 479 1 479
SQG10689.1 2.43e-305 1 479 1 479
QJC74620.1 6.97e-305 1 479 1 479
SNW10357.1 6.97e-305 1 479 1 479

PDB Hits      download full data without filtering help

Created with Snap23477195119143167191215239263287311335359383407431455534655GKD_A534655GKQ_A384647O77_A384647O7T_A523847O84_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5GKD_A 3.95e-107 53 465 19 430
Structureof PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_B Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_C Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis],5GKD_D Structure of PL6 family alginate lyase AlyGC [Paraglaciecola chathamensis]
5GKQ_A 3.06e-106 53 465 19 430
Structureof PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6],5GKQ_B Structure of PL6 family alginate lyase AlyGC mutant-R241A [Paraglaciecola chathamensis S18K6]
7O77_A 4.69e-94 38 464 3 428
ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c]
7O7T_A 4.69e-94 38 464 3 428
ChainA, Poly(Beta-D-mannuronate) lyase [Pseudoalteromonas atlantica T6c]
7O84_A 9.38e-70 52 384 32 356
ChainA, Alginate lyase [Pseudopedobacter saltans DSM 12145],7O84_B Chain B, Alginate lyase [Pseudopedobacter saltans DSM 12145]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2347719511914316719121523926328731133535938340743145554384sp|Q06365|ALYP_PSESO52353sp|Q46079|CSLB_PEDHD
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q06365 1.12e-74 54 384 2 324
Alginate lyase OS=Pseudomonas sp. (strain OS-ALG-9) OX=86038 GN=aly PE=3 SV=1
Q46079 1.21e-24 52 353 41 350
Chondroitinase-B OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=cslB PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.019104 0.970223 0.009543 0.000508 0.000282 0.000282

TMHMM  Annotations      download full data without filtering help

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