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CAZyme Information: MGYG000000003_01298
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Alistipes shahii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes shahii | |||||||||||
| CAZyme ID | MGYG000000003_01298 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 668280; End: 671243 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK05306 | infB | 0.0 | 279 | 987 | 45 | 746 | translation initiation factor IF-2; Validated |
| COG0532 | InfB | 0.0 | 486 | 987 | 1 | 506 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| CHL00189 | infB | 0.0 | 416 | 987 | 167 | 741 | translation initiation factor 2; Provisional |
| TIGR00487 | IF-2 | 0.0 | 407 | 986 | 4 | 584 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| cd01887 | IF2_eIF5B | 1.97e-91 | 491 | 654 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 2.30e-192 | 408 | 984 | 276 | 855 |
| CAE6204650.1 | 6.67e-09 | 494 | 696 | 751 | 970 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 1.06e-190 | 337 | 986 | 248 | 887 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 1.36e-182 | 488 | 986 | 8 | 506 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 4.08e-182 | 488 | 986 | 2 | 500 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 5LMV_a | 2.27e-146 | 471 | 984 | 56 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
| 3J4J_A | 4.58e-145 | 471 | 984 | 56 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A6LHS1 | 1.95e-307 | 273 | 986 | 285 | 971 | Translation initiation factor IF-2 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=infB PE=3 SV=1 |
| B2RHM9 | 1.24e-296 | 354 | 986 | 342 | 977 | Translation initiation factor IF-2 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) OX=431947 GN=infB PE=3 SV=1 |
| Q7MXE4 | 1.24e-296 | 354 | 986 | 342 | 977 | Translation initiation factor IF-2 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=infB PE=3 SV=1 |
| Q5LIN1 | 3.30e-295 | 348 | 986 | 376 | 1013 | Translation initiation factor IF-2 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=infB PE=3 SV=1 |
| Q64ZR4 | 3.30e-295 | 348 | 986 | 376 | 1013 | Translation initiation factor IF-2 OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000083 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |