CAZyme Information: MGYG000000006_00015

Basic Information

• Species: Staphylococcus xylosus
• Lineage: Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus
• CAZyme ID: MGYG000000006_00015
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
552	MGYG000000006_1|CGC1	58937.32	4.3505

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000006	2822527	Isolate	United Kingdom	Europe

• Gene Location: Start: 12629; End: 14287 Strand: +

Full Sequence      

MNLSKNNFKDDFEKNRQSIDPKEQQDNAKDSVSNSVDNAKEEVSDKTDEQFPPRNAQRRQ
RRRDTATNQREDEETNQTDQQGHGEDGEFDSQQYNEDNSTSEHNTDDPSQNNNLSHEPTN
DKTNANDHKYSDDSDALENDNSSKKKGAAVAGGAAATGAGAYAANKHQDKDNRDSNVDES
QNDNQNHADEQNDNQNQPDNQSNQNQNESQQDNSKNGSKKKGAAVAGGAAAAGAGAYAAG
KHKGKNDENASHGDEKSKNDQNDNEDQQNDEKSSNKKKGAAVAGGAAAAGTGAAVASHSK
SSGGNGNGNGGNGNGGNNNNDDDNNKKKKGGLLGKLLPILAAILILAAIAIFAGMALTGN
NDDSKNNDDKKVADNKDKDSNKDSDKDKKSNDDKANKDDDKNGSSDSDGNSTSSDDANSD
SDQSNSNSQDQANSDQNQSDQSQSDQSDQDQANQSDQSQQNQQGSQSQQNDQANTQNGST
EQSQGSTSDNQQNQGANSNSGQQTHTVNGQNLYRIAIQYYGDGSPENVEKIREANNLQGN
EIHNGQRLVIPQ

Enzyme Prediction     

No EC number prediction in MGYG000000006_00015.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
NF033598	elast_bind_EbpS	1.03e-23	5	551	1	466	elastin-binding protein EbpS. The elastin-binding protein EbpS is an adhesin described in Staphylococcus aureus, with orthologs found in many additional staphylococcal species. EbpS is a membrane protein that lacks an N-terminal signal peptide region, has extensive regions low-complexity sequence rich in Asn and Gln, and has a C-terminal LysM domain.
pfam01476	LysM	5.73e-05	505	551	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG5271	MDN1	5.20e-04	17	278	3825	4089	Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis].
COG5271	MDN1	0.001	13	217	3929	4124	Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis].
PRK12678	PRK12678	0.003	14	213	56	254	transcription termination factor Rho; Provisional

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QDW89145.1	1.22e-121	1	552	1	552
ARD74584.1	1.99e-66	1	552	1	542
QRA15459.1	2.00e-40	1	139	1	143
QKV11442.1	2.55e-28	1	169	2	172
QKQ10341.1	1.08e-22	1	169	2	172

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q49XT4	2.19e-20	3	169	1	169	Probable elastin-binding protein EbpS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=ebpS PE=4 SV=1
Q2YY76	3.51e-13	507	551	438	483	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=ebpS PE=3 SV=3
Q6GGT1	3.54e-13	507	551	441	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=ebpS PE=3 SV=3
Q6G983	3.54e-13	507	551	441	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=ebpS PE=3 SV=3
Q5HFU2	3.54e-13	507	551	441	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain COL) OX=93062 GN=ebpS PE=3 SV=3

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000067	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

start	end
336	358