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CAZyme Information: MGYG000000006_00015

You are here: Home > Sequence: MGYG000000006_00015

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus xylosus
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus
CAZyme ID MGYG000000006_00015
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
552 MGYG000000006_1|CGC1 58937.32 4.3505
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000006 2822527 Isolate United Kingdom Europe
Gene Location Start: 12629;  End: 14287  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000006_00015.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
NF033598 elast_bind_EbpS 1.03e-23 5 551 1 466
elastin-binding protein EbpS. The elastin-binding protein EbpS is an adhesin described in Staphylococcus aureus, with orthologs found in many additional staphylococcal species. EbpS is a membrane protein that lacks an N-terminal signal peptide region, has extensive regions low-complexity sequence rich in Asn and Gln, and has a C-terminal LysM domain.
pfam01476 LysM 5.73e-05 505 551 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG5271 MDN1 5.20e-04 17 278 3825 4089
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis].
COG5271 MDN1 0.001 13 217 3929 4124
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis].
PRK12678 PRK12678 0.003 14 213 56 254
transcription termination factor Rho; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDW89145.1 1.22e-121 1 552 1 552
ARD74584.1 1.99e-66 1 552 1 542
QRA15459.1 2.00e-40 1 139 1 143
QKV11442.1 2.55e-28 1 169 2 172
QKQ10341.1 1.08e-22 1 169 2 172

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q49XT4 2.19e-20 3 169 1 169
Probable elastin-binding protein EbpS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=ebpS PE=4 SV=1
Q2YY76 3.51e-13 507 551 438 483
Elastin-binding protein EbpS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=ebpS PE=3 SV=3
Q6GGT1 3.54e-13 507 551 441 486
Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=ebpS PE=3 SV=3
Q6G983 3.54e-13 507 551 441 486
Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=ebpS PE=3 SV=3
Q5HFU2 3.54e-13 507 551 441 486
Elastin-binding protein EbpS OS=Staphylococcus aureus (strain COL) OX=93062 GN=ebpS PE=3 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000067 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
336 358