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CAZyme Information: MGYG000000006_01487

You are here: Home > Sequence: MGYG000000006_01487

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus xylosus
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus
CAZyme ID MGYG000000006_01487
CAZy Family GH0
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
761 MGYG000000006_9|CGC2 90510.86 8.5253
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000006 2822527 Isolate United Kingdom Europe
Gene Location Start: 92102;  End: 94387  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000006_01487.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3664 XynB 2.18e-53 331 758 1 427
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 8.75e-27 158 262 21 125
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 6.64e-24 174 256 2 84
helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 5.80e-20 179 258 1 81
Helix-turn-helix domain.
COG2169 AdaA 1.92e-16 158 261 83 184
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDW88232.1 0.0 1 761 1 761
QRA17052.1 0.0 1 761 1 764
QKU18815.1 9.52e-306 1 759 1 760
QKQ04680.1 1.46e-302 1 758 1 758
QPW18100.1 2.93e-302 1 758 1 758

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3OOU_A 1.43e-12 162 257 10 105
Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua]
6SWI_A 1.94e-07 165 256 13 105
TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
1BL0_A 8.01e-07 162 256 16 110
MultipleAntibiotic Resistance Protein (Mara)DNA COMPLEX [Escherichia coli]
1XS9_A 8.54e-07 162 256 19 113
ChainA, Multiple antibiotic resistance protein marA [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8NYT6 2.21e-136 11 758 12 742
Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21 2.21e-136 11 758 12 742
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q7A882 8.65e-136 11 758 12 742
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q99XB1 8.65e-136 11 758 12 742
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q5HJR8 9.44e-135 11 758 12 742
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000035 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000006_01487.