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CAZyme Information: MGYG000000006_02070
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Staphylococcus xylosus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus | |||||||||||
| CAZyme ID | MGYG000000006_02070 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | putative transglycosylase SceD | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 71287; End: 72009 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13925 | RPF | 4.49e-18 | 166 | 239 | 1 | 70 | core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. |
| pfam06737 | Transglycosylas | 3.95e-17 | 164 | 240 | 1 | 75 | Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CEF17543.1 | 6.21e-115 | 1 | 240 | 1 | 243 |
| QDW88006.1 | 6.21e-115 | 1 | 240 | 1 | 243 |
| AID41557.1 | 2.91e-106 | 1 | 240 | 1 | 243 |
| QRA16844.1 | 1.00e-100 | 1 | 240 | 1 | 237 |
| ARD75735.1 | 3.17e-96 | 1 | 240 | 1 | 233 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q49Z43 | 1.80e-90 | 1 | 240 | 1 | 238 | Probable transglycosylase SceD 3 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sceD3 PE=3 SV=1 |
| Q4A0X5 | 9.73e-88 | 1 | 240 | 1 | 238 | Probable transglycosylase SceD 1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sceD1 PE=3 SV=1 |
| Q4A0X4 | 6.08e-69 | 1 | 240 | 1 | 249 | Probable transglycosylase SceD 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sceD2 PE=3 SV=1 |
| Q8CMK7 | 4.30e-62 | 1 | 240 | 1 | 219 | Probable transglycosylase SceD OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sceD PE=3 SV=1 |
| Q5HMC6 | 4.30e-62 | 1 | 240 | 1 | 219 | Probable transglycosylase SceD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sceD PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000358 | 0.998824 | 0.000212 | 0.000220 | 0.000192 | 0.000170 |