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CAZyme Information: MGYG000000011_00180

You are here: Home > Sequence: MGYG000000011_00180

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus xylosus_B
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus_B
CAZyme ID MGYG000000011_00180
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
316 MGYG000000011_1|CGC4 35094.38 5.1051
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000011 2927352 Isolate United Kingdom Europe
Gene Location Start: 185025;  End: 185975  Strand: +

Full Sequence      Download help

MKKGLTFSIT  TAAMFFGING  IASADQIHTV  KENAKLTDIA  QAFATTTTEI  QNLNQINDRE60
YVQAGERLVL  PDNDIVEVKV  GDSIQSIADA  YQLTVEQLNQ  LNPNLGEMIY  PGQLIAVSEK120
GSAHLNNQIQ  QMFNEQIEGQ  SNTSDGNYNE  VINEQSTPNR  TTTSTNVTSI  APQTWPNVNA180
HDVAENNQQM  HVDSNVESKE  HYRPVQQASN  GNNYYTWGQC  TYYAFDRRQQ  LGKSVGNLWG240
NANNWASAAR  QNGYQVNHTP  EVGAIFQSNA  GNYGHVGIVE  RKNSDGSILV  SEMNWQGVGQ300
KSYRTVHNTG  QYNYIH316

Enzyme Prediction      help

No EC number prediction in MGYG000000011_00180.

CDD Domains      download full data without filtering help

Created with Snap153147637994110126142158173189205221237252268284300210316COG3942183306PRK08581212294CHAP75115LysM46130LysM
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3942 COG3942 1.06e-37 210 316 63 171
Surface antigen [Cell wall/membrane/envelope biogenesis].
PRK08581 PRK08581 2.85e-24 183 306 482 605
amidase domain-containing protein.
pfam05257 CHAP 3.22e-21 212 294 2 83
CHAP domain. This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Escherichia coli gss, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.
smart00257 LysM 4.19e-06 75 115 1 42
Lysin motif.
COG1388 LysM 7.08e-06 46 130 40 123
LysM repeat [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Created with Snap1531476379941101261421581731892052212372522682843001316AID00825.1|CBM501316ARD73859.1|CBM501316QDW89788.1|CBM501316AID43372.1|CBM501316CEF19472.1|CBM50
Hit ID E-Value Query Start Query End Hit Start Hit End
AID00825.1 2.02e-201 1 316 1 316
ARD73859.1 1.17e-200 1 316 1 316
QDW89788.1 1.85e-197 1 316 1 316
AID43372.1 7.51e-197 1 316 1 316
CEF19472.1 3.05e-196 1 316 1 316

PDB Hits      download full data without filtering help

Created with Snap1531476379941101261421581731892052212372522682843002093162LRJ_A2133162K3A_A1973065T1Q_A2152974CGK_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
2LRJ_A 7.34e-30 209 316 5 112
ChainA, Staphyloxanthin biosynthesis protein, putative [Staphylococcus aureus subsp. aureus COL]
2K3A_A 1.74e-29 213 316 50 153
ChainA, CHAP domain protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
5T1Q_A 3.00e-19 197 306 231 345
ChainA, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325],5T1Q_B Chain B, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325],5T1Q_C Chain C, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325],5T1Q_D Chain D, N-acetylmuramoyl-L-alanine amidase domain-containing protein SAOUHSC_02979 [Staphylococcus aureus subsp. aureus NCTC 8325]
4CGK_A 2.16e-09 215 297 287 365
Crystalstructure of the essential protein PcsB from Streptococcus pneumoniae [Streptococcus pneumoniae D39],4CGK_B Crystal structure of the essential protein PcsB from Streptococcus pneumoniae [Streptococcus pneumoniae D39]

Swiss-Prot Hits      download full data without filtering help

Created with Snap1531476379941101261421581731892052212372522682843001316sp|Q2G278|LDP_STAA82316sp|Q5HRU2|SLE1_STAEQ2316sp|Q8CMN2|SLE1_STAES2316sp|Q6GJK9|SLE1_STAAR1316sp|Q2G0D4|SSAAL_STAA8
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q2G278 5.73e-40 1 316 1 279
Probable autolysin LDP OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_00773 PE=1 SV=1
Q5HRU2 5.40e-36 2 316 3 324
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sle1 PE=3 SV=1
Q8CMN2 5.40e-36 2 316 3 324
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sle1 PE=3 SV=1
Q6GJK9 1.03e-32 2 316 3 334
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=sle1 PE=3 SV=1
Q2G0D4 6.60e-32 1 316 1 265
Probable autolysin SsaALP OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=SAOUHSC_00671 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000468 0.998618 0.000221 0.000232 0.000225 0.000205

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000011_00180.