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CAZyme Information: MGYG000000012_02465

You are here: Home > Sequence: MGYG000000012_02465

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacillus subtilis
Lineage Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis
CAZyme ID MGYG000000012_02465
CAZy Family CBM50
CAZyme Description Stage VI sporulation protein D
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
564 63780.33 3.967
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000012 4053580 Isolate United Kingdom Europe
Gene Location Start: 303997;  End: 305691  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000012_02465.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR02907 spore_VI_D 4.03e-32 7 296 1 273
stage VI sporulation protein D. SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation. [Cellular processes, Sporulation and germination]
pfam01476 LysM 3.10e-07 515 557 2 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
smart00257 LysM 5.63e-07 513 556 1 44
Lysin motif.
cd00118 LysM 6.24e-07 512 556 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
TIGR00927 2A1904 1.01e-05 165 371 638 846
K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASB61897.1 0.0 1 564 1 566
QRZ91669.1 9.01e-318 1 564 1 562
AUZ39719.1 3.96e-312 1 564 1 562
AUS10940.1 1.81e-300 1 564 1 568
QJD05115.1 4.23e-289 1 564 1 575

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P37963 8.02e-288 1 564 1 575
Stage VI sporulation protein D OS=Bacillus subtilis (strain 168) OX=224308 GN=spoVID PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000050 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000012_02465.