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CAZyme Information: MGYG000000012_03213

You are here: Home > Sequence: MGYG000000012_03213

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacillus subtilis
Lineage Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis
CAZyme ID MGYG000000012_03213
CAZy Family PL1
CAZyme Description Pectin lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
345 MGYG000000012_3|CGC13 37988.61 9.5333
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000012 4053580 Isolate United Kingdom Europe
Gene Location Start: 972939;  End: 973976  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000012_03213.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 83 274 1.6e-91 0.9948717948717949

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.89e-125 4 336 1 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 6.28e-58 92 277 7 190
Amb_all domain.
pfam00544 Pec_lyase_C 2.32e-44 93 273 26 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRZ90970.1 4.29e-254 1 345 1 345
AUS14071.1 4.29e-254 1 345 1 345
AFI28572.1 2.04e-252 1 345 1 345
ASB61140.1 4.80e-251 1 345 1 345
AUZ38955.1 1.38e-250 1 345 1 345

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1PCL_A 2.02e-16 53 322 17 337
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1OOC_A 7.55e-11 54 273 24 287
ChainA, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi]
1JRG_A 1.01e-10 54 273 24 287
ChainA, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi]
1QCX_A 1.03e-09 53 273 13 276
PectinLyase B [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34819 2.53e-247 1 345 1 345
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P94449 3.59e-247 1 345 1 345
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
P27027 5.09e-105 26 344 1 311
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 6.13e-99 28 343 3 312
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q0CBV0 1.42e-23 53 253 45 236
Probable pectate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000275 0.999055 0.000192 0.000164 0.000157 0.000157

TMHMM  Annotations      download full data without filtering help

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