CAZyme Information: MGYG000000025_00281

Basic Information

• Species: Staphylococcus nepalensis
• Lineage: Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus nepalensis
• CAZyme ID: MGYG000000025_00281
• CAZy Family: GH0
• CAZyme Description: HTH-type transcriptional activator RhaR

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
760	MGYG000000025_1|CGC5	89344.09	6.8454

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000025	2822370	Isolate	United Kingdom	Europe

• Gene Location: Start: 305517; End: 307799 Strand: -

Full Sequence      

MEIFYDIEFNDSGNSVVNFNDGVRMVLVLKSTLKVVRGSQFQTFQAGDVFIINHRERYQF
IEEDDALYISIHLAEAYLRQYINDFNGKMYILNQQTLQGVIYKQIINAIAKIGIVYIRKG
KFYRLYLEQQLIDLIFIIVRYLPTHDNATLENDINDERLEFVCQYIEKYFNTPITLSEIA
EKVHLSTTYLSKLFTKHMGIGFNHYINHIRTEHCKNDLVHTNASITQIALKNGFSNSTML
LKYFKANTGLTPSQYRTQYQSEDHPTKIKKTTEFENYQRYLYYLSSYIQQTLGTIIQSPD
NQKVIDITLENNLSQQLSHYQHVIQIGSFDTLLIQRYRKQLIEVQHDLGLDHVLIKDPIL
KGYVDRNVIESDEMIPNMHPYMKVDECLNFLYEHQIGLGIEMHPPTLPSQFEKYTKELKC
LLEHIYNTVPNRDCFKLVVYLKCNHTQKILNVITLFKQYFEFAHIVLNIDMDNMNALATA
KKLLSEASTNIDSIAFNANQNDIINFKSIESKQYDLAKRHIIAQYNTMTRLLGVKDKNIP
VVLLNWNTLTGNTHLTNGEYFRAGIIFEQLIDMNHRIHAIGYWLNHELHHQYNANDVISE
LNGIDLYHQFDGKRPAFFTSMFFKKLFKQVLFKNEDCIVLGCNDQFQIVVWDAEHYNPYY
TINEKSDYLLHKEYQLNILNADKGTYKVKHLTLDKNNGALYQVWQQYNTRHGMDEETINY
VNRVSYPKLDVSEVDIVDTVSYHLKLQTNAIQIIEFKKYF

Enzyme Prediction     

No EC number prediction in MGYG000000025_00281.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3664	XynB	6.64e-56	332	759	1	427	Beta-xylosidase [Carbohydrate transport and metabolism].
smart00342	HTH_ARAC	1.06e-25	173	256	1	84	helix_turn_helix, arabinose operon control protein.
225117	COG2207	8.11e-25	151	261	14	124	AraC AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
pfam12833	HTH_18	5.77e-21	179	258	1	81	Helix-turn-helix domain.
COG4753	YesN	4.01e-18	156	260	371	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QKU18815.1	0.0	1	760	1	760
QKQ04680.1	0.0	1	759	1	758
QDX04871.1	0.0	1	759	1	758
QPW18100.1	0.0	1	759	1	758
QCY41628.1	0.0	1	759	1	758

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3OOU_A	8.69e-14	159	260	7	108	Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua]
3LSG_A	5.61e-09	167	256	13	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	1.13e-143	28	759	28	742	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q99XB1	3.17e-143	21	759	21	742	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q6GD21	3.17e-143	21	759	21	742	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q7A882	3.17e-143	21	759	21	742	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q8NYT6	3.17e-143	21	759	21	742	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000030	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000025_00281.