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CAZyme Information: MGYG000000029_00054

You are here: Home > Sequence: MGYG000000029_00054

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides finegoldii
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides finegoldii
CAZyme ID MGYG000000029_00054
CAZy Family PL12
CAZyme Description Heparin-sulfate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
710 MGYG000000029_1|CGC3 82210.5 6.0993
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000029 4415875 Isolate United Kingdom Europe
Gene Location Start: 70234;  End: 72366  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000029_00054.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL12 426 573 2e-45 0.9923664122137404

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam16889 Hepar_II_III_N 1.11e-108 52 405 1 344
Heparinase II/III N-terminus. This is the N-terminal domain of heparinase II/III proteins. It is a toroid-like domain.
pfam07940 Hepar_II_III 1.62e-28 416 629 2 202
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGT73986.1 3.84e-224 50 708 48 702
ALJ42863.1 1.15e-220 51 708 49 702
QMW86970.1 1.15e-220 51 708 49 702
QUT70295.1 1.15e-220 51 708 49 702
BCA49289.1 1.15e-220 51 708 49 702

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4FNV_A 4.19e-222 51 708 49 702
CrystalStructure of Heparinase III [Bacteroides thetaiotaomicron VPI-5482]
5JMD_A 1.19e-117 51 708 18 655
HeparinaseIII-BT4657 gene product, Methylated Lysines [Bacteroides thetaiotaomicron VPI-5482]
5JMF_A 1.81e-107 51 708 18 655
HeparinaseIII-BT4657 gene product [Bacteroides thetaiotaomicron VPI-5482]
4MMI_A 2.01e-87 52 710 10 638
Crystalstructure of heparan sulfate lyase HepC mutant from Pedobacter heparinus [Pedobacter heparinus]
4MMH_A 1.06e-86 52 680 10 607
Crystalstructure of heparan sulfate lyase HepC from Pedobacter heparinus [Pedobacter heparinus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q89YR9 2.29e-221 51 708 49 702
Heparin-sulfate lyase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=hepC PE=1 SV=1
C7EXL6 1.20e-112 51 708 29 666
Heparin-sulfate lyase OS=Bacteroides stercoris OX=46506 GN=hepC PE=1 SV=1
Q59289 8.47e-86 52 680 34 631
Heparin-sulfate lyase OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=hepC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000884 0.187506 0.811372 0.000086 0.000076 0.000070

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000029_00054.