dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000029_00159

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Basic Information help

Species

Bacteroides finegoldii

Lineage

Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides finegoldii

CAZyme ID

MGYG000000029_00159

CAZy Family

GH28

CAZyme Description

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
641		71640.72	6.0937

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000029	4415875	Isolate	United Kingdom	Europe

Gene Location

Start: 211149; End: 213074 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000000029_00159.

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00144	Beta-lactamase	1.15e-35	35	322	1	295	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG0596	MhpC	1.10e-34	374	636	5	279	Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only].
COG1680	AmpC	1.52e-28	36	322	43	350	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].
TIGR02427	protocat_pcaD	2.46e-26	381	636	2	250	3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other]
pfam00561	Abhydrolase_1	5.33e-17	391	625	2	245	alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ALJ62047.1	1.01e-149	362	636	511	785
QUT92203.1	5.65e-149	362	636	511	785
QDU48154.1	7.15e-20	1	297	1	351
QXD14887.1	6.01e-19	35	257	600	859
QDT25196.1	2.04e-18	1	297	1	351

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5TGF_A	1.21e-184	24	362	2	337	ChainA, Uncharacterized protein [Phocaeicola dorei DSM 17855],5TGF_B Chain B, Uncharacterized protein [Phocaeicola dorei DSM 17855],5TGF_C Chain C, Uncharacterized protein [Phocaeicola dorei DSM 17855],5TGF_D Chain D, Uncharacterized protein [Phocaeicola dorei DSM 17855]
5EGN_A	7.60e-22	381	636	11	260	Est816as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_B Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_C Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_D Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_E Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_F Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_G Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium],5EGN_H Est816 as an N-Acyl homoserine lactone degrading enzyme [uncultured bacterium]
3FOB_A	5.65e-15	381	636	19	279	Crystalstructure of bromoperoxidase from Bacillus anthracis [Bacillus anthracis str. Ames],3FOB_B Crystal structure of bromoperoxidase from Bacillus anthracis [Bacillus anthracis str. Ames],3FOB_C Crystal structure of bromoperoxidase from Bacillus anthracis [Bacillus anthracis str. Ames]
1HKH_A	1.81e-14	372	636	1	277	unligatedgamma lactamase from an Aureobacterium species [Microbacterium],1HKH_B unligated gamma lactamase from an Aureobacterium species [Microbacterium],1HL7_A Gamma lactamase from an Aureobacterium species in complex with 3a,4,7,7a-tetrahydro-benzo [1,3] dioxol-2-one [Microbacterium sp.],1HL7_B Gamma lactamase from an Aureobacterium species in complex with 3a,4,7,7a-tetrahydro-benzo [1,3] dioxol-2-one [Microbacterium sp.]
4GDN_A	2.08e-14	35	217	15	210	ChainA, Protein flp [Staphylococcus aureus subsp. aureus N315],4GDN_B Chain B, Protein flp [Staphylococcus aureus subsp. aureus N315],4GDN_C Chain C, Protein flp [Staphylococcus aureus subsp. aureus N315],4GDN_D Chain D, Protein flp [Staphylococcus aureus subsp. aureus N315]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q6F9F4	2.60e-16	378	636	11	259	(E)-2-((N-methylformamido)methylene)succinate hydrolase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=tgnD PE=1 SV=1
Q8NUZ4	3.88e-14	35	217	43	238	Protein flp OS=Staphylococcus aureus (strain MW2) OX=196620 GN=flp PE=3 SV=1
Q6G6M9	3.88e-14	35	217	43	238	Protein flp OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=flp PE=3 SV=1
Q99RJ0	2.78e-13	35	217	43	238	Protein flp OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=flp PE=3 SV=1
Q7A3Q5	2.78e-13	35	217	43	238	Protein flp OS=Staphylococcus aureus (strain N315) OX=158879 GN=flp PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000351	0.260936	0.738394	0.000104	0.000114	0.000104

TMHMM Annotations help

There is no transmembrane helices in MGYG000000029_00159.