dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000036_00565

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Basic Information help

Species

Pseudoruminococcus massiliensis

Lineage

Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; Pseudoruminococcus; Pseudoruminococcus massiliensis

CAZyme ID

MGYG000000036_00565

CAZy Family

GH24

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
876	MGYG000000036_1\|CGC4	93930.05	9.7636

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000036	2411078	Isolate	United Kingdom	Europe

Gene Location

Start: 599717; End: 602347 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000000036_00565.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH24	701	849	4.2e-19	0.9854014598540146

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd00737	lyz_endolysin_autolysin	8.04e-23	705	854	2	136	endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
COG3772	RrrD	5.68e-14	699	858	6	152	Phage-related lysozyme (muramidase), GH24 family [Cell wall/membrane/envelope biogenesis].
pfam08239	SH3_3	3.70e-12	60	111	3	54	Bacterial SH3 domain.
cd16901	lyz_P1	2.95e-10	699	849	1	135	P1 lysozyme Lyz-like proteins. Enterobacteria phage P1 lysozyme Lyz is secreted to the Escherichia coli periplasm where it is membrane bound and inactive. Activation involves the release from the membrane, an intramolecular thiol-disulfide isomerization and extensive structural rearrangement of the N-terminal region. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
COG5492	YjdB	2.60e-08	251	412	154	313	Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCT44110.1	1.05e-36	116	630	318	797
VCV21496.1	1.22e-20	145	510	1482	1856
AYQ33267.1	3.53e-19	119	586	1373	1803
ANQ52856.2	4.31e-19	117	560	1297	1792
QWG05121.1	6.70e-16	117	560	1297	1792

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q086E4	1.57e-13	114	591	228	654	Ice-binding protein 1 OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=Sfri_1018 PE=1 SV=1
P33747	9.27e-07	439	588	40	206	Uncharacterized protein CA_P0160 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=CA_P0160 PE=3 SV=2
Q37896	7.99e-06	724	857	21	146	Endolysin OS=Bacillus phage B103 OX=10778 GN=15 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.044153	0.954290	0.000714	0.000363	0.000239	0.000228

TMHMM Annotations download full data without filtering help

start	end
23	45