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CAZyme Information: MGYG000000041_00098

You are here: Home > Sequence: MGYG000000041_00098

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acetatifactor sp900066365
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor; Acetatifactor sp900066365
CAZyme ID MGYG000000041_00098
CAZy Family GH53
CAZyme Description Arabinogalactan endo-beta-1,4-galactanase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
357 MGYG000000041_1|CGC3 40218.77 4.9285
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000041 3646137 Isolate United Kingdom Europe
Gene Location Start: 90500;  End: 91573  Strand: -

Full Sequence      Download help

MEFIKGMDIS  MVKELEVSGA  SYYINGKQED  LFRILKECGT  TMVRLRIWSD  PFDEMGNSYG60
GGGNDLQTTI  EIAGRTVENG  MDFMLDFHYS  DFWADPAKQI  KPKAWQKLRG  EALETAVYLH120
TVNTLKALKN  HKLIPKMVQV  GNEITKGLLW  PDGYVEQTEN  MARLLRAGIR  GVREECPGAG180
IVLHLDFGTN  NELYRQWFDR  IAPFALDYDV  IGMSYYPHWN  GSLEQLQNNM  NDISARYGKN240
VLVVETSIGY  TTDTLGCKGI  VYSEKEEEAT  GYPATQEGQE  QFLRDLMATV  RKVKENRGIG300
VFYWEPAWLP  IPDCTWASTS  GSQYMQEKMA  AGNAMANMAL  FDAAGNANSA  LLHMKTM357

Enzyme Prediction      help

EC 3.2.1.89

CAZyme Signature Domains help

Created with Snap17355371891071241421601781962142322492672853033213394351GH53
Family Start End Evalue family coverage
GH53 4 351 5.7e-127 0.9883040935672515

CDD Domains      download full data without filtering help

Created with Snap17355371891071241421601781962142322492672853033213392351GanB4315Glyco_hydro_53
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3867 GanB 3.15e-137 2 351 38 388
Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism].
pfam07745 Glyco_hydro_53 4.24e-128 4 315 1 306
Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.

CAZyme Hits      help

Created with Snap17355371891071241421601781962142322492672853033213391357QNM03636.1|GH531357AEN97260.1|GH531351QJS19157.1|GH531348BBF43148.1|GH533351QKS48639.1|GH53
Hit ID E-Value Query Start Query End Hit Start Hit End
QNM03636.1 5.34e-270 1 357 1 357
AEN97260.1 8.20e-217 1 357 1 357
QJS19157.1 1.20e-143 1 351 1 351
BBF43148.1 4.36e-136 1 348 1 348
QKS48639.1 1.28e-120 3 351 5 370

PDB Hits      download full data without filtering help

Created with Snap173553718910712414216017819621423224926728530332133913477OSK_A23451R8L_A23452GFT_A53091HJQ_A53094BF7_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
7OSK_A 6.18e-87 1 347 48 384
ChainA, Arabinogalactan endo-1,4-beta-galactosidase [Ignisphaera aggregans DSM 17230],7OSK_B Chain B, Arabinogalactan endo-1,4-beta-galactosidase [Ignisphaera aggregans DSM 17230]
1R8L_A 1.38e-83 2 345 23 379
Thestructure of endo-beta-1,4-galactanase from Bacillus licheniformis [Bacillus licheniformis],1R8L_B The structure of endo-beta-1,4-galactanase from Bacillus licheniformis [Bacillus licheniformis],1UR0_A The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],1UR0_B The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],1UR4_A The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],1UR4_B The structure of endo-beta-1,4-galactanase from Bacillus licheniformis in complex with two oligosaccharide products. [Bacillus licheniformis],2CCR_A Structure of Beta-1,4-Galactanase [Bacillus licheniformis],2CCR_B Structure of Beta-1,4-Galactanase [Bacillus licheniformis],2J74_A Structure of Beta-1,4-Galactanase [Bacillus licheniformis],2J74_B Structure of Beta-1,4-Galactanase [Bacillus licheniformis]
2GFT_A 1.10e-82 2 345 23 379
ChainA, Glycosyl Hydrolase Family 53 [Bacillus licheniformis],2GFT_B Chain B, Glycosyl Hydrolase Family 53 [Bacillus licheniformis]
1HJQ_A 1.26e-52 5 309 5 301
Structureof two fungal beta-1,4-galactanases: searching for the basis for temperature and pH optimum. [Humicola insolens]
4BF7_A 6.27e-51 5 309 22 318
Emericillanidulans endo-beta-1,4-galactanase [Aspergillus nidulans]

Swiss-Prot Hits      download full data without filtering help

Created with Snap17355371891071241421601781962142322492672853033213393310sp|P48843|YBAB_NIACI2345sp|Q65CX5|GANB_BACLD2346sp|O07013|GANB_BACSU5309sp|P83691|GANA_HUMIN3309sp|P48841|GANA_CELJU
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P48843 2.42e-90 3 310 6 314
Uncharacterized protein in bgaB 5'region (Fragment) OS=Niallia circulans OX=1397 PE=3 SV=1
Q65CX5 1.56e-82 2 345 48 404
Endo-beta-1,4-galactanase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=ganB PE=1 SV=1
O07013 1.39e-78 2 346 52 409
Endo-beta-1,4-galactanase OS=Bacillus subtilis (strain 168) OX=224308 GN=ganB PE=1 SV=1
P83691 6.88e-52 5 309 5 301
Arabinogalactan endo-beta-1,4-galactanase OS=Humicola insolens OX=34413 PE=1 SV=1
P48841 4.10e-51 3 309 27 330
Arabinogalactan endo-beta-1,4-galactanase OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=ganB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000057 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000041_00098.