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CAZyme Information: MGYG000000041_01615

You are here: Home > Sequence: MGYG000000041_01615

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acetatifactor sp900066365
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor; Acetatifactor sp900066365
CAZyme ID MGYG000000041_01615
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
465 MGYG000000041_10|CGC3 53012.01 4.9559
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000041 3646137 Isolate United Kingdom Europe
Gene Location Start: 88096;  End: 89493  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000041_01615.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 170 452 3.6e-42 0.8369230769230769

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.40e-18 145 350 117 366
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 3.03e-07 150 303 76 236
polygalacturonase
PLN02793 PLN02793 1.89e-05 170 299 117 252
Probable polygalacturonase
PLN02218 PLN02218 3.15e-05 225 418 191 378
polygalacturonase ADPG
pfam00295 Glyco_hydro_28 5.16e-05 189 303 40 167
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJD84919.1 1.44e-116 21 458 42 481
QTH41144.1 2.14e-112 14 458 27 474
QNK57055.1 1.40e-110 21 444 32 459
AZS17007.1 7.21e-100 14 463 26 477
AWW32777.1 2.23e-67 32 448 34 479

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9SFB7 3.04e-07 190 303 140 272
Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2
Q94AJ5 1.66e-06 170 448 117 395
Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000079 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000041_01615.