CAZyme Information: MGYG000000044_00437

Basic Information

• Species: Parabacteroides merdae
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides merdae
• CAZyme ID: MGYG000000044_00437
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
601	MGYG000000044_1|CGC8	67943.51	7.6686

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000044	4300426	Isolate	United Kingdom	Europe

• Gene Location: Start: 507926; End: 509731 Strand: -

Full Sequence      

MNKINIYVLTFFLSLAGVSIYAQNNRSQVVITSGQDNNVFFHTIEKGQTVYAIATMYGVT
PDDIYRLNPDSKEGIKAGATLKIPQRDIVGGTAKKQDGNYIFHTIQPKETLYSLSIRYTV
PATAIVKANPGLSTSTFTIGKTIRIPATQVEDLPTTELKTVTKEIEYTVQKKETMYRICR
KFNISSYELIKLNPKLKEGVKAGMTIKIPVQAEENMTTEPATTMLSERDVNALLSEPKSI
ERVNSVKVALLLPFMTNETIPSTETQRFIEYYEGLLLAVDSLKNTGCSIDLSVYDTGNGT
KKLKEILKEDALKNANLIIGAVQNDQIGPVAEFAQKNNIKYVIPFTSKNDDVLSNAYVYQ
VNTPHSYLYAKAAQGGCDLFAEDNIILLNIRDGKDKTEFIKAFKAEMKQRQIPFTEINYN
AETLTADVDTLLRTDKRNVIVPTSGTLEALNKIKSPLRMLAETKPECGLTLFGYPEWQTY
TRDCLEDFYALNTYIYSNFYADNLSKEVADFYTKYKNWYSKNLINIFPKYGILGFDTGMF
FIGAINKYGSNFENNLDKIHYQGVQTGFDFHRVNNWGGFINTNIFIVHYQSDFNVTRNEV
R

Enzyme Prediction     

No EC number prediction in MGYG000000044_00437.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd00118	LysM	1.64e-08	41	83	2	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
cd00118	LysM	7.78e-07	165	208	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476	LysM	2.62e-06	42	84	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
smart00257	LysM	2.74e-06	166	208	1	44	Lysin motif.
COG3858	YaaH	3.47e-06	40	156	2	105	Spore germination protein YaaH [Cell cycle control, cell division, chromosome partitioning].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT48586.1	0.0	1	601	1	600
QJE27971.1	0.0	1	601	1	602
QCY56025.1	0.0	1	601	1	602
ABR42587.1	0.0	1	601	1	602
QRO17230.1	0.0	1	601	1	602

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000595	0.998460	0.000376	0.000199	0.000172	0.000156

TMHMM  Annotations     

start	end
5	22