CAZyme Information: MGYG000000044_01369

Basic Information

• Species: Parabacteroides merdae
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides merdae
• CAZyme ID: MGYG000000044_01369
• CAZy Family: PL35
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
609	MGYG000000044_3|CGC1	68335.92	6.9258

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000044	4300426	Isolate	United Kingdom	Europe

• Gene Location: Start: 11462; End: 13291 Strand: -

Full Sequence      

MNKTLYLIFICLLLCAGTHLVAQTFDYNRVSGHPRLLMKQGEEQQIRESLKDNPEMQRVY
KQIVGEADRLLVCPTLTYKKEGRRLLAVSREALKRIFDLSFVYRMTGEDKYRLRAEQEMV
SVCSFGDWNPSHFLDVGEMTMAVAIGYDWLFDKLSPETRRVVRESILQKGFAPSNDKQYN
WFLKAENNWNQVCNTGLVYGALALLDSDSKEAAAVIERAMSSVPLSMKVYAPDGNYPEGY
NYWGYGTSFNVMLIAALESALGSDGGLSAVEGFMSSARFMQYMAGTTGLAFNFSDARETT
QSFPAMFWYASKLGDPSLLWNEKIFLTREDTHFTAEEERFLPIILIYGSRFDMKEVTPPV
SKIWTGHGKVPVALIRTGWDKGEGFYVGIKGGTASANHAHMDAGSFVFEAQGVRWAQDLG
MQEYYSLEKEGVRLWNGDQDGQRWDVFRYNNFVHNTLTVNGEKHQVKGAVPILATYTKDA
RLGASLDMTSLFGSNLKKATREVVLVKERYLQVTDQVQAAGQPASVRWTMVTSATPKLLD
SHTIELTKEGKKLHVIIDSPSAAAFSVVDNVPSHSYDAPNPGSVRIVFDVDVKAGRKETL
KVRLVPVVE

Enzyme Prediction     

No EC number prediction in MGYG000000044_01369.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL35	383	561	7.5e-66	0.9832402234636871

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam07940	Hepar_II_III	1.45e-11	387	595	28	228	Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam16332	DUF4962	0.001	29	170	132	290	Domain of unknown function (DUF4962). This family consists of uncharacterized proteins around 870 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT49750.1	0.0	1	609	1	609
AYB29714.1	6.18e-257	22	606	18	600
QIU93528.1	2.19e-218	1	606	1	602
QUR45369.1	8.82e-218	1	606	1	602
QDH53590.1	2.04e-216	1	606	1	602

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3A0O_A	3.31e-06	83	537	199	666	Crystalstructure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58],3A0O_B Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58]
3AFL_A	9.94e-06	83	295	199	416	Crystalstructure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide [Agrobacterium fabrum str. C58]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000254	0.999144	0.000186	0.000138	0.000133	0.000130

TMHMM  Annotations     

start	end
5	27