CAZyme Information: MGYG000000047_02583

Basic Information

• Species: Clostridium disporicum_A
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium disporicum_A
• CAZyme ID: MGYG000000047_02583
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
686	MGYG000000047_20|CGC1	81306.18	4.626

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000047	3448648	Isolate	United Kingdom	Europe

• Gene Location: Start: 416; End: 2476 Strand: -

Full Sequence      

MRREFINYPLDLPIKISYFNIRNYPIHWHNSIEIVYVIKGSIDITIDSDSFTLNEKEVEI
INVDEAHKFYSKEDNKILIFNIDPSFFEKYYKDIKNVFFYTTSNSTQVGEEYDDLKAFLA
KLLCEYVQKLEDYDEEIEDILIHLLYHLINNFHYLTTEKEELKEKTEQLDRYHRISKYIF
NNYNNNITLKDIAKKEFLSPHYLSHEIKYATGSSFTDLINQTRVEESIKLLLDSDISISE
ISDEVGFSHVRYYNKNFKEYYNCTPLQYRKKFSLTEKEFELEKVLYPLPLEESLEFLSHT
LEKYNRYNFENKLWNIHIDMDETLKTFNPDFGHIINIGEAFDLLIEDNKDILEEIQDEIH
FDYGRLEKMFHNDMGVFIDSEFYNWNKAKAVLEFLTDISLKPLILLDSTEYSLEKYQNIL
TSFIDYFSQIDYFNITDFCFQFASDLSCEIKDSLKSFINDNFDIEILEETFFSVNSLNPI
YDTAYMLPYIIHNTVIKEKSLDFLRAFDVLEKAMNITNEVFIGAPGLINDMAIKKPSYYA
YYLLSKLGKEIVSFDDGYIVTKNDDEYAILLYSHGNDVDDLANYEDIYSSKGLKKSFEKK
FSLNIVNLKNDTRITTYEINEKIGSSYNYWLSMGSPDRLNKEEKEILYKASYPKIEFKYS
KKSLVLNIITELKGYGAKLILLKNIK

Enzyme Prediction     

No EC number prediction in MGYG000000047_02583.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	467	639	5.9e-20	0.382830626450116

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
smart00342	HTH_ARAC	1.50e-22	187	269	2	84	helix_turn_helix, arabinose operon control protein.
COG2207	AraC	7.66e-22	169	273	19	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
pfam12833	HTH_18	1.50e-18	192	271	1	81	Helix-turn-helix domain.
COG4753	YesN	2.35e-13	56	271	262	473	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG3664	XynB	2.09e-09	521	656	268	397	Beta-xylosidase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATD56640.1	0.0	1	686	1	689
QBJ75981.1	0.0	1	686	1	689
SLK21057.1	0.0	1	686	1	689
ATD55683.1	0.0	1	686	1	689
QSW20159.1	0.0	1	686	1	688

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3LSG_A	1.85e-11	188	270	21	103	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	1.85e-18	30	656	21	713	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GKK1	3.23e-18	30	656	21	713	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q6GD21	4.26e-18	30	656	21	713	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	4.26e-18	30	656	21	713	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q99XB1	9.80e-18	30	656	21	713	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000040	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000047_02583.