CAZyme Information: MGYG000000048_00734

Basic Information

• Species: Clostridium_P ventriculi
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_P; Clostridium_P ventriculi
• CAZyme ID: MGYG000000048_00734
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
686	MGYG000000048_2|CGC6	81741.91	5.6707

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000048	2457227	Isolate	United Kingdom	Europe

• Gene Location: Start: 293797; End: 295857 Strand: +

Full Sequence      

MRKEYITYQDNMPISVSFLSIENYPIHWHNSIEIIYVLEGSLNIDINLSSSKIFKNNIEI
INIDEAHRLYSNDYNKVLIFHIDPYFFEKYYTDIENMFFYTDTSNENSQNTDVYDEFKTF
LSIIVCEIVQKSLDYDEEIEKNLISLLFHLINNFHYLTYDNEEIKENENLLERYHRIAKY
IFNNYNNNITLKDIANKEFLSTHYLSHEIKYATGLSFTDLVNLTRVEESIKFLLDSDKTI
SDICEEVGFSHTRYFNKHFKNYYGLTPLQYRKKFKVNETTYKKEKKLTRYPLDFSLKYLS
YYIDDYDRFNYENKINKITFDMNEDLGVFNKEFKEIINVGDAFDLLIEDNKDILEQLQEE
IGFNYVRMINVFSPDMGIFPGSKFFNWTRAYDIFEYVESLNLKPLIILNFKNFSDYEILA
TLTSFLEYFNDVEGLNFKNFKFQFDTKIKKDLSHEIKIILEDQYNLEVLDNCYHLFDYTN
SIYDTAYMLPYIIHNSIYNLSSLYYIKAFDTLDKQVNLTNEVFFGYPGLVNSKGIKKPSY
YAYYLLNMLGNTLVSIDKGFIVTKSHSEYQILLYSFNESFNNLLNFKNVDKIKKTQNVTN
KLSINILNIKSNTRIIEYDINEKSGSSFDYWISMGKPKRLKKEEKEILHKSSFPKINFRY
SKKSTVLNIQATLKGYSAKLIILKET

Enzyme Prediction     

No EC number prediction in MGYG000000048_00734.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	472	640	1.1e-19	0.37587006960556846

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG2207	AraC	9.51e-23	163	275	11	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	5.38e-22	189	271	2	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	3.65e-19	194	273	1	81	Helix-turn-helix domain.
COG4753	YesN	1.48e-14	50	275	256	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG4977	GlxA	1.11e-08	190	277	238	325	Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QPJ85154.1	0.0	1	686	1	686
QXE20743.1	3.16e-303	1	685	1	687
AZV56511.1	1.04e-301	1	685	1	687
QUD71906.1	1.59e-300	1	685	1	685
QAT40622.1	1.43e-294	1	685	1	687

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3LSG_A	9.38e-09	190	271	21	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q05587	5.71e-09	176	281	196	299	Regulatory protein PocR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=pocR PE=1 SV=2
Q00753	8.16e-09	176	277	177	278	Msm operon regulatory protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) OX=210007 GN=msmR PE=4 SV=2
P96660	1.65e-08	25	272	39	288	Uncharacterized HTH-type transcriptional regulator YdeC OS=Bacillus subtilis (strain 168) OX=224308 GN=ydeC PE=4 SV=1
O31522	2.24e-08	176	267	660	750	HTH-type transcriptional regulator YesS OS=Bacillus subtilis (strain 168) OX=224308 GN=yesS PE=2 SV=1
P43461	5.14e-07	180	274	72	164	Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) OS=Pseudoalteromonas carrageenovora OX=227 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000047	0.000004	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000048_00734.