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CAZyme Information: MGYG000000048_01277

You are here: Home > Sequence: MGYG000000048_01277

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium_P ventriculi
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_P; Clostridium_P ventriculi
CAZyme ID MGYG000000048_01277
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
438 MGYG000000048_4|CGC1 48670.07 4.6728
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000048 2457227 Isolate United Kingdom Europe
Gene Location Start: 91127;  End: 92443  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000048_01277.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 7.53e-11 339 397 4 57
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 9.70e-06 339 397 47 102
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG3409 PGRP 2.38e-04 362 399 148 185
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
TIGR02669 SpoIID_LytB 0.007 283 307 236 260
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QPJ86275.1 0.0 1 438 1 438
QPJ86276.1 1.65e-239 1 438 1 439
QQA12469.1 1.04e-199 1 438 1 438
AQW25085.1 2.97e-199 1 438 1 438
SQI05872.1 4.21e-199 1 438 1 438

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999655 0.000332 0.000030 0.000002 0.000001 0.000018

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000048_01277.