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CAZyme Information: MGYG000000054_01531

You are here: Home > Sequence: MGYG000000054_01531

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides acidifaciens
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides acidifaciens
CAZyme ID MGYG000000054_01531
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
506 MGYG000000054_14|CGC1 57260.23 6.3645
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000054 5213730 Isolate United Kingdom Europe
Gene Location Start: 7050;  End: 8570  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000054_01531.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 197 484 1.6e-46 0.7661538461538462

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.62e-16 142 420 79 397
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 8.75e-09 210 452 48 276
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 1.80e-07 209 490 106 372
Probable polygalacturonase At3g15720
PLN02793 PLN02793 8.60e-06 242 314 180 254
Probable polygalacturonase
PLN02218 PLN02218 1.04e-05 242 497 218 422
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QQA09746.1 0.0 1 506 1 506
QQT79215.1 0.0 1 506 1 506
ASW16392.1 0.0 1 506 1 506
QRP58901.1 0.0 1 506 1 506
SCM58771.1 4.09e-98 43 491 58 500

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 1.35e-10 213 332 179 298
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 2.98e-09 238 485 189 415
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q949Z1 3.36e-10 241 421 212 363
Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1
Q9LW07 3.86e-08 209 490 106 372
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
A2QW66 8.10e-07 188 420 105 339
Probable exopolygalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgxA PE=3 SV=1
Q27UB2 8.10e-07 188 420 105 339
Exopolygalacturonase A OS=Aspergillus niger OX=5061 GN=pgxA PE=3 SV=1
Q873X6 3.33e-06 214 420 145 344
Probable exopolygalacturonase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgxB PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000241 0.999158 0.000165 0.000151 0.000145 0.000129

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000054_01531.