CAZyme Information: MGYG000000054_01959

Basic Information

• Species: Bacteroides acidifaciens
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides acidifaciens
• CAZyme ID: MGYG000000054_01959
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1005		111641.06	9.7444

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000054	5213730	Isolate	United Kingdom	Europe

• Gene Location: Start: 2424; End: 5441 Strand: +

Full Sequence      

MKIIPSILAILFLLSAGQVTGSAQNVTTDTVEPLLVSKALQDEDCRHWVDSVMNKLSFKE
KVGQLFIYTIAPIDTKRNLELLREAVDTYKVGGLLFSGGKMQTQVALTNRAQKLAKVPVM
ITFDGEWGLAMRLRGTPVFPRNMILGCIRDNQLIYEYGREVARQCRQIGVQVNFAPVADV
NINPKNPVINTRSFGEDPIQVADKVIAYAYGLEGGGVLSVCKHFPGHGDTDVDSHKALPV
LPFTRERLDSVELYPFKRAIRAGLGGMMVGHLQVPVIEPIGGVPSSLSRNVVSGLLTDEL
GFKGLIFTDALAMKGVAGNGNVSLQALKAGNDMVLAPRNLKNEVSAVLEAVEKGELGKED
IENKCRKVLTYKYVLGLKKKPFIQLSGLEQRVNSPQARDLVRRLNQAAITVLNNKNHILP
LHADKAQTIALLEVGKPGETEALAKQMSRYVSLARFRLRPNQTEEESRRLRDSLATYKRI
IIAVSEQRLAPYQPFFAKFAPESPAIYLFFTPGKMMLQIHRSVSHASAVVLGHSHNSDVQ
RQTADILFAKATADGRLSASLGGLFPTGAGVTITPKTPSHFVPEEYGLSSALLKKIDTIA
LDGIQQGAYPGCQVVVLKNGHVMVDKAFGTYAGKGSPRVESTDIYDLASLSKTTGTLLAL
MKLYDKGRFNLTDKISGYLPFLQRTDKKDITIQEILYHQSGLPSWLPFYQEVIDKESYDG
RLFSVRKDAQHPVRIGTATWANPKFKFKSEYISPVKKDDYTIQICDNLWLNRSFRKVIEE
KIVEAPLKQKRYVYSDIGFILLGMLVEQLAGMPMEAYLQREFYGPMGMERTGYLPLRRFS
KSEIVPSNKDRFLRKETLQGFVHDEASSFFGGLAGNAGLFSTAREVAHLYQMLLNGGEID
GQRYLSKETCQLFTTGVSKISRRGLGFDKPDMKDPKKGNCASVVPAETYGHTGFTGTCAW
VDPVNELVYVFLSNRIYPDVTNRKLNQLHIRERIQEAIYGAMKKK

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	112	335	1.1e-56	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	2.06e-79	59	432	4	360	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	1.60e-73	60	370	4	315	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	6.65e-59	583	1003	30	432	putative periplasmic esterase; Provisional
COG1680	AmpC	1.01e-46	558	979	1	367	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].
pfam00144	Beta-lactamase	1.83e-41	596	988	1	321	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIU92871.1	0.0	1	1005	1	1005
QUT79868.1	0.0	1	1005	1	1003
QGT72105.1	0.0	1	1005	1	1003
QDM09839.1	0.0	1	1005	1	1003
ALJ47263.1	0.0	1	1005	1	1003

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	2.04e-60	50	460	36	483	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	5.89e-60	50	460	10	457	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
6K5J_A	1.00e-59	56	415	11	379	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
4GYJ_A	1.05e-59	50	460	40	487	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	1.20e-47	91	361	58	335	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	1.12e-59	50	460	36	483	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.60e-44	82	432	55	435	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
B5RCU8	3.91e-42	583	1000	30	421	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=yfeW PE=3 SV=1
Q8ZN80	1.31e-41	583	1000	30	421	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yfeW PE=3 SV=1
B5BB26	1.31e-41	583	1000	30	421	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.004719	0.993592	0.000629	0.000373	0.000317	0.000325

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000054_01959.