logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000078_02667

You are here: Home > Sequence: MGYG000000078_02667

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira rogosae_A
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira rogosae_A
CAZyme ID MGYG000000078_02667
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2550 289671.78 4.5871
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000078 3032544 Isolate United Kingdom Europe
Gene Location Start: 40706;  End: 48358  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000078_02667.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 4.89e-58 1190 1761 1 538
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4646 COG4646 2.27e-24 1862 2097 401 636
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
smart00487 DEXDc 1.19e-10 1707 1848 7 145
DEAD-like helicases superfamily.
smart00490 HELICc 1.94e-10 2150 2236 1 82
helicase superfamily c-terminal domain.
cd18793 SF2_C_SNF 2.17e-08 2150 2248 41 135
C-terminal helicase domain of the SNF family helicases. The Sucrose Non-Fermenting (SNF) family includes chromatin-remodeling factors, such as CHD proteins and SMARCA proteins, recombination proteins Rad54, and many others. They are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AXF51455.1 1.53e-293 903 2536 1791 3460
AEY69616.1 2.03e-292 903 2536 1698 3367
ASV45029.1 8.64e-290 894 2463 1548 3151
QIW86704.1 1.29e-288 894 2463 1616 3219
QIW86628.1 1.29e-288 894 2463 1616 3219

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 1.76e-31 896 2328 33 1594
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000067 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000078_02667.