logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000084_00077

You are here: Home > Sequence: MGYG000000084_00077

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Gemmiger formicilis
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger formicilis
CAZyme ID MGYG000000084_00077
CAZy Family GH2
CAZyme Description Beta-galactosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
925 MGYG000000084_1|CGC2 102554.47 4.6508
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000084 3006488 Isolate United Kingdom Europe
Gene Location Start: 86811;  End: 89588  Strand: -

Full Sequence      Download help

MTPELRWLSD  PTVFAVNRLD  AHSDHLCCRT  LDEAESGLTS  LRQSLDGAWR  FAWSANPAAR60
PADFWQPDAD  LSGFGTIRVP  GHIELQGYGQ  LQYTNTLYPW  DGRSCLRPPQ  VDWNDDPVGS120
YVKEFDLDES  LRGQRVCVSF  QGVEQAMYLW  CNGQFVGYAE  DSFTPSEFDL  TPYIRDENNR180
LCVEVYKRSS  AAWIEDQDFF  RFSGIFRSVY  LYAKPRVHIN  DIWLKADLAA  DNTTGLLTPL240
VKLDGETDGA  SVALVVTDPE  GYAVYEGPAA  GDTIEIEGIQ  PWSHAAPVLY  HAVLTLRDAD300
GVLQEVVPYD  IGFRRFEMIN  GVMCLNGERV  VFNGVNRHEW  NADRGRAIGA  DDMHAAMAVF360
KKNNINAVRT  CHYPDQSLWY  DLCDRNGIYM  IDETNLESHG  SWQKLGAVEP  SWNVPGSLPE420
WKDCVVDRAR  SMFERDKNHA  AVLIWSCGNE  SYAGEDILAM  SQFFHDHDPG  RLVHYEGVFH480
CRAFDAISDM  ESRMYAKPWE  IREYLESHPK  KPFILCEYMH  DMGNSLGGME  SYVKLADEFD540
QYQGGFIWDY  MDQALRHTDA  LGRSVLGYGG  DFADRNTDYN  FSGNGIVYAD  GAEKPAMQDV600
RYWYDTPARR  AAHDARNAAA  AARADRDAAK  AQAARKPGTL  TVTEGDGNLG  VRGDGFEILF660
SAGEAGPSSL  TVNGSEWLWR  APRPAFWRAA  TDNDRGCGFP  QKAAAWLAAD  VYLQNLGFAV720
LQKSADGVQV  RYTYGVPTVP  GAKAELTYTV  EPQGTLLVEA  VYHGVPGAPE  LPCFGIKFQT780
FAPVARTLWT  GLSGETYPDR  CKGGVFGCHE  EVPHIEPALV  PQDCGLHVGT  RQFTLEQHNA840
CGQTAAALTI  EQADAPFAFS  ALPNTAQEIE  AAQHITELPA  TGRTSVTILG  AARGVGGIDS900
WGTDVEEPYR  VSGEGEHRVA  FRIVL925

Enzyme Prediction      help

EC 3.2.1.23

CAZyme Signature Domains help

Created with Snap469213818523127732337041646250855560164769374078683287833605GH2
Family Start End Evalue family coverage
GH2 33 605 2.9e-141 0.6210106382978723

CDD Domains      download full data without filtering help

Created with Snap469213818523127732337041646250855560164769374078683287817925ebgA11922lacZ33604LacZ316604Glyco_hydro_2_C652923Bgal_small_N
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK10340 ebgA 2.11e-170 17 925 13 999
cryptic beta-D-galactosidase subunit alpha; Reviewed
PRK09525 lacZ 1.04e-163 11 922 20 1025
beta-galactosidase.
COG3250 LacZ 4.56e-136 33 604 3 553
Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].
pfam02836 Glyco_hydro_2_C 1.17e-123 316 604 1 297
Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.
smart01038 Bgal_small_N 2.63e-68 652 923 1 272
Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase.

CAZyme Hits      help

Created with Snap46921381852312773233704164625085556016476937407868328781923QJU20849.1|GH21923QIX90509.1|GH21923QQR01804.1|GH21923ANU49268.1|GH22916SET68766.1|GH2
Hit ID E-Value Query Start Query End Hit Start Hit End
QJU20849.1 0.0 1 923 1 954
QIX90509.1 0.0 1 923 1 951
QQR01804.1 0.0 1 923 1 951
ANU49268.1 0.0 1 923 1 951
SET68766.1 0.0 2 916 5 996

PDB Hits      download full data without filtering help

Created with Snap4692138185231277323370416462508555601647693740786832878449236S6Z_A449236SD0_A109171JZ7_A109174V41_A109171F4A_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
6S6Z_A 2.46e-134 44 923 40 979
Structureof beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_B Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_C Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_D Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_E Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_F Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_G Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8],6S6Z_H Structure of beta-Galactosidase from Thermotoga maritima [Thermotoga maritima MSB8]
6SD0_A 2.52e-134 44 923 41 980
Structureof beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8],6SD0_B Structure of beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8],6SD0_C Structure of beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8],6SD0_D Structure of beta-galactosidase from Thermotoga maritima. [Thermotoga maritima MSB8]
1JZ7_A 3.86e-118 10 917 18 1015
E.COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH GALACTOSE [Escherichia coli],1JZ7_B E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH GALACTOSE [Escherichia coli],1JZ7_C E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH GALACTOSE [Escherichia coli],1JZ7_D E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH GALACTOSE [Escherichia coli],4TTG_A Beta-galactosidase (E. coli) in the presence of potassium chloride. [Escherichia coli],4TTG_B Beta-galactosidase (E. coli) in the presence of potassium chloride. [Escherichia coli],4TTG_C Beta-galactosidase (E. coli) in the presence of potassium chloride. [Escherichia coli],4TTG_D Beta-galactosidase (E. coli) in the presence of potassium chloride. [Escherichia coli]
4V41_A 3.86e-118 10 917 18 1015
E.COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_B E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_C E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_D E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_E E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_F E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_G E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_H E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_I E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_J E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_K E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_L E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_M E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_N E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_O E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V41_P E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) [Escherichia coli BL21],4V44_A E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_B E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_C E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_D E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_E E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_F E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_G E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_H E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_I E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_J E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_K E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_L E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_M E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_N E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_O E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V44_P E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH 2-F-LACTOSE [Escherichia coli],4V45_A E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_B E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_C E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_D E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_E E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_F E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_G E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_H E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_I E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_J E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_K E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_L E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_M E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_N E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_O E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli],4V45_P E. COLI (lacZ) BETA-GALACTOSIDASE-TRAPPED 2-F-GALACTOSYL-ENZYME INTERMEDIATE [Escherichia coli]
1F4A_A 7.18e-118 10 917 16 1013
E.COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC) [Escherichia coli],1F4A_B E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC) [Escherichia coli],1F4A_C E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC) [Escherichia coli],1F4A_D E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC) [Escherichia coli],1F4H_A E. COLI (LACZ) BETA-GALACTOSIDASE (ORTHORHOMBIC) [Escherichia coli],1F4H_B E. COLI (LACZ) BETA-GALACTOSIDASE (ORTHORHOMBIC) [Escherichia coli],1F4H_C E. COLI (LACZ) BETA-GALACTOSIDASE (ORTHORHOMBIC) [Escherichia coli],1F4H_D E. COLI (LACZ) BETA-GALACTOSIDASE (ORTHORHOMBIC) [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Created with Snap46921381852312773233704164625085556016476937407868328787923sp|Q9K9C6|BGAL_ALKHC3810sp|P24131|BGAL_CLOAT1923sp|P23989|BGAL_STRTR1604sp|Q02603|BGAL_LEULA1604sp|O07684|BGAL_LACAC
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9K9C6 1.31e-277 7 923 9 1011
Beta-galactosidase OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=lacZ PE=3 SV=1
P24131 3.61e-266 3 810 6 894
Beta-galactosidase OS=Clostridium acetobutylicum OX=1488 GN=cbgA PE=2 SV=2
P23989 1.96e-260 1 923 3 1022
Beta-galactosidase OS=Streptococcus thermophilus OX=1308 GN=lacZ PE=3 SV=1
Q02603 5.22e-237 1 604 1 622
Beta-galactosidase large subunit OS=Leuconostoc lactis OX=1246 GN=lacL PE=1 SV=1
O07684 5.52e-229 1 604 1 624
Beta-galactosidase large subunit OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=lacL PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000062 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000084_00077.