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CAZyme Information: MGYG000000084_02272

You are here: Home > Sequence: MGYG000000084_02272

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Gemmiger formicilis
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger formicilis
CAZyme ID MGYG000000084_02272
CAZy Family GH2
CAZyme Description Beta-galactosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
790 MGYG000000084_11|CGC2 87636.01 6.5563
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000084 3006488 Isolate United Kingdom Europe
Gene Location Start: 76848;  End: 79220  Strand: -

Full Sequence      Download help

MRYSLCNHWE  FTEQWSDAFC  RGEPVGCRPV  RLPHTCRELP  LHYADPSDYE  MVCGYRRTLT60
VPDAPRVFLR  FDGAAHQAEI  YLNGQLAGQH  QGGYTGFTIE  ITDLVHRGTE  NLLAVRLDTR120
EDPSLPPFGF  VIDYLTYGGL  YREVWLETSP  QSRVSDLFVY  TPTLTEAAVQ  LTVEAPEKAA180
ALRVRLCSSA  GKTLVSRQLP  PAESAECRLT  LPDAAPWDTE  HPNLYRCIAE  LLDAEGQVLH240
SRETSFGFRT  AVFRADGFYL  NGKKTFLRGL  NRHQSYPYIG  YAAPESLQRQ  DARILKNELH300
CNAVRTSHYP  QSQYFLDECD  RLGLLVFTEL  PGWQHIGDGA  WKDRACAMLR  EMLLQNRNHP360
SIILWGVRIN  ESVDDDEFYT  RTNQIAHALD  PSRATSGVRY  LEKSHLLEDV  YAYNDFSHNG420
SNAGAKRKKD  VTPDLSKALL  ISECNGHMYP  TKSCDDAPHR  QEHALRHARV  LDAAYADGEH480
AGCFGWCMFD  YATHKDFGSG  DRICYHGVLD  SFRNPKLAAS  VYASQGGEEP  VLTVSSAMDI540
GDYPAGQIGT  VYVFTNAERV  NLYKNDVFVT  TLHKSGWTAL  PHPPLAVDDT  IGVLLETQEH600
FDKAKADTLR  DCLLAAGRYG  LAGLPLRYKL  KLAWCMVRYK  MSFADGVALY  GKYVGNWGGA660
ATRWRFDAKN  GDTVVKSVTL  CPSHRLHLEV  TPSATVLQEG  DTYNMAGVRV  RILDENGSPA720
VYAQLPLTFA  VTGAAVLVGP  AAATAEGGMG  GTYLRTVGQT  GTAALTVSAP  QCAPVTVEFT780
VTKKECAVWN  790

Enzyme Prediction      help

EC 3.2.1.23

CAZyme Signature Domains help

Created with Snap39791181581972372763163553954344745135535926326717117504523GH2
Family Start End Evalue family coverage
GH2 4 523 1.1e-102 0.6117021276595744

CDD Domains      download full data without filtering help

Created with Snap397911815819723727631635539543447451355359263267171175055526LacZ2401PRK1015041393ebgA46372lacZ258522Glyco_hydro_2_C
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3250 LacZ 1.90e-67 55 526 67 564
Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].
PRK10150 PRK10150 1.40e-52 2 401 12 451
beta-D-glucuronidase; Provisional
PRK10340 ebgA 4.01e-41 41 393 88 470
cryptic beta-D-galactosidase subunit alpha; Reviewed
PRK09525 lacZ 1.20e-33 46 372 116 463
beta-galactosidase.
pfam02836 Glyco_hydro_2_C 1.05e-21 258 522 8 293
Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.

CAZyme Hits      help

Created with Snap39791181581972372763163553954344745135535926326717117501790ATO98959.1|GH21790QIA42639.1|GH21790ATL89252.1|GH21790AXB28859.1|GH21790CBL02555.1|GH2
Hit ID E-Value Query Start Query End Hit Start Hit End
ATO98959.1 0.0 1 790 1 793
QIA42639.1 0.0 1 790 1 793
ATL89252.1 0.0 1 790 1 793
AXB28859.1 0.0 1 790 1 793
CBL02555.1 0.0 1 790 1 793

PDB Hits      download full data without filtering help

Created with Snap397911815819723727631635539543447451355359263267171175077815EUV_A77815LDR_A45656ED1_A126136MVF_A305865UJ6_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5EUV_A 1.10e-152 7 781 8 730
ChainA, Beta-D-galactosidase [Paracoccus sp. 32d],5EUV_B Chain B, Beta-D-galactosidase [Paracoccus sp. 32d],5LDR_B Chain B, Beta-D-galactosidase [Paracoccus sp. 32d]
5LDR_A 1.14e-152 7 781 9 731
ChainA, Beta-D-galactosidase [Paracoccus sp. 32d]
6ED1_A 7.34e-50 4 565 28 642
ChainA, Glycosyl hydrolase family 2, sugar binding domain protein [Phocaeicola dorei],6ED1_B Chain B, Glycosyl hydrolase family 2, sugar binding domain protein [Phocaeicola dorei],6ED1_C Chain C, Glycosyl hydrolase family 2, sugar binding domain protein [Phocaeicola dorei],6ED1_D Chain D, Glycosyl hydrolase family 2, sugar binding domain protein [Phocaeicola dorei]
6MVF_A 4.25e-47 12 613 31 649
Crystalstructure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6 [Faecalibacterium prausnitzii L2-6],6MVF_B Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6 [Faecalibacterium prausnitzii L2-6],6MVF_C Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6 [Faecalibacterium prausnitzii L2-6],6MVF_D Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6 [Faecalibacterium prausnitzii L2-6],6MVF_E Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6 [Faecalibacterium prausnitzii L2-6],6MVF_F Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6 [Faecalibacterium prausnitzii L2-6]
5UJ6_A 6.40e-47 30 586 57 671
CrystalStructure of Bacteroides Uniformis beta-glucuronidase [Bacteroides uniformis str. 3978 T3 ii],5UJ6_B Crystal Structure of Bacteroides Uniformis beta-glucuronidase [Bacteroides uniformis str. 3978 T3 ii],6NZG_A Bacteroides uniformis beta-glucuronidase 2 covalently bound to cyclophellitol-6-carboxylate aziridine [Bacteroides uniformis],6NZG_B Bacteroides uniformis beta-glucuronidase 2 covalently bound to cyclophellitol-6-carboxylate aziridine [Bacteroides uniformis]

Swiss-Prot Hits      download full data without filtering help

Created with Snap39791181581972372763163553954344745135535926326717117507588sp|P26257|BGAL_THETU30761sp|P77989|BGAL_THEP311588sp|Q59750|BGAL_RHIML30565sp|T2KPJ7|PLH8_FORAG55567sp|T2KM09|PLH16_FORAG
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P26257 9.80e-163 7 588 9 612
Beta-galactosidase OS=Thermoanaerobacterium thermosulfurigenes OX=33950 GN=lacZ PE=1 SV=1
P77989 2.92e-149 30 761 35 717
Beta-galactosidase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=lacZ PE=3 SV=2
Q59750 3.91e-84 11 588 7 612
Beta-galactosidase OS=Rhizobium meliloti OX=382 GN=lacZ PE=1 SV=1
T2KPJ7 2.99e-63 30 565 82 668
Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_21970 PE=2 SV=1
T2KM09 7.28e-34 55 567 110 662
Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22050 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000052 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000084_02272.