CAZyme Information: MGYG000000098_03902

Basic Information

• Species: Bacteroides bouchesdurhonensis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides bouchesdurhonensis
• CAZyme ID: MGYG000000098_03902
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1000		110981.12	9.2034

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000098	4868436	Isolate	Canada	North America

• Gene Location: Start: 10574; End: 13576 Strand: -

Full Sequence      

MRILIFVIAIFLILPLKAQEVATGTAVEPLLLYKANQDEQCRQWVDSVMNKLTLKEKVGQ
LFIYTIAPVDTKRNQILLKEAVDTYKVGGLLFSGGKMQNQVELTNRAQRMAKVPLMLTFD
GEWGLAMRLRGTPVFPKNMVLGCIQDNRLIYEYGREMARQCRLLGIQVNFAPVADVNINP
NNPVINTRSFGENPIQVSDKVIAYASGLEGGGVLSVCKHFPGHGDTDADSHKTLPVLPFT
RERLDSVELYPFKEAIRAGVSGMMVGHLQVPVIEPVGGLASSLSRNVVYDLLTDELAFKG
LIFTDALAMKGVSGNQSICLQALKAGNDIVLSPRNLKEEIPAVIEAVEKGEISKEDIENK
CRKVLIYKYILGLKKKPHVQLSGLGQRINTPQTRDLIRRLNLAAITVLDNKNQVLPLHAD
TSQSVALLEVGDVGETNPLAQQLSNYVSISRFRLQSNLAEIQARQLKDSLATYKRIIVAI
SEQRLAPYQAFFAKFAPQTPVIYLFFTPGKMMLQIQQAVTAASSVVLAHSYDDDVQKQVA
DVLFAKATADGRLSASLGGIFSAGAGVTITPQTPLHFIPEEYGLSSTILQRIDSIALDGI
RQGAYPGCQIVVMKDGHLMVDKTFGTHSGEGSNRVQPTDVYDLASLSKTTGTLLALMKLY
DKGRFNLTDKISDYLPFLQRTNKKDITIQELLYHQSGLPAGIALYQEAIDKDSYEGRLFS
ARKDAHHSVQLGTSTWANPKFEFKKEYVSPIEKKEYNLQISDSLWLNPAFLKEMEKKIVE
APMKSKTYTYSDVGFVLLRLLVEQLAGVPMDTYLQREFYQPMGLGHTGYLPLRRLPKSVV
VPSSDDHFLRKTTLRGFVHDETAAFQGGVSGNAGLFSTAREVAQVYQMLLNGGELNGKRY
LSKETCQLFTTEVSKISRRGLGFDKPDTKNPRMSPCGTHATAKVYGHTGFTGTCAWVDPD
NRLVYVFLSNRIYPKVTNGKLSKMNIRENIQDVIYEAMKQ

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	108	331	2.2e-54	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	1.59e-67	53	365	1	314	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	2.03e-66	52	419	1	352	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	2.93e-59	579	999	30	432	putative periplasmic esterase; Provisional
COG1680	AmpC	3.33e-43	554	974	1	366	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].
pfam00144	Beta-lactamase	1.23e-41	592	974	1	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QMW84889.1	0.0	1	999	1	999
BCA51881.1	0.0	1	999	1	999
ALJ43829.1	0.0	1	999	1	999
AAO77546.1	0.0	1	999	1	999
QUT72692.1	0.0	1	999	1	999

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	7.56e-54	52	493	11	461	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3LK6_A	9.84e-48	46	416	10	420	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
3BMX_A	1.42e-47	46	416	36	446	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
4GYJ_A	1.54e-47	46	416	40	450	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	8.28e-42	59	357	31	335	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	7.78e-47	46	416	36	446	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
B4TD53	8.53e-43	579	982	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=yfeW PE=3 SV=1
Q8Z4S7	1.56e-42	579	982	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella typhi OX=90370 GN=yfeW PE=3 SV=1
B5BB26	1.56e-42	579	982	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=yfeW PE=3 SV=1
B5RCU8	1.56e-42	579	982	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000186	0.999217	0.000154	0.000142	0.000133	0.000134

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000098_03902.