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CAZyme Information: MGYG000000108_00539

You are here: Home > Sequence: MGYG000000108_00539

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Citrobacter freundii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii
CAZyme ID MGYG000000108_00539
CAZy Family GT73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
258 MGYG000000108_1|CGC5 28872.19 8.3763
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000108 4739906 Isolate Canada North America
Gene Location Start: 566474;  End: 567250  Strand: +

Full Sequence      Download help

MLITHEILNG  IMGERVSDDC  IIYLSGPSSL  DTPLEIMRSK  SCICVNGSAG  YLINNNIPVF60
LYVVCDGSFY  ENNKDLFYKY  SAYAQHTFIS  EDVIKRANST  EAETLLNTCF  LLKDICKSRG120
GIGRKIRYKI  KTMTNRNLRI  KCSASRKVKT  IAFSTDVAHG  HFGSATVAFS  ALQIAISLKF180
ERIIFSGLSL  KDSCKRFYNE  VNAQPTTLPA  DLSFILRSFS  YVSSHYDGKI  YNLSPQTAIP240
YDVIPFINTE  EIACSTSY258

Enzyme Prediction      help

No EC number prediction in MGYG000000108_00539.

CAZyme Signature Domains help

Created with Snap1225385164779010311612914115416718019320621923224515249GT73
Family Start End Evalue family coverage
GT73 15 249 1e-59 0.9836734693877551

CDD Domains      download full data without filtering help

Created with Snap122538516477901031161291411541671801932062192322452250WaaZ_KDO_III3258PRK09822
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR04437 WaaZ_KDO_III 1.75e-141 2 250 1 252
Kdo-III transferase WaaZ. Members of this family are WaaZ, or Kdo-III transferase. This enzyme, present in some strains of E. coli and its allies but not others, performs a non-stoichiometric addition of a third 3-deoxy-D-manno-oct-2-ulosonic acid (KDO-III) onto some fraction of KDO-II in the lipopolysaccharide (LPS) inner core. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK09822 PRK09822 4.17e-62 3 258 7 265
lipopolysaccharide core biosynthesis protein; Provisional

CAZyme Hits      help

Created with Snap122538516477901031161291411541671801932062192322451258QSB97135.1|GT731258QSB81332.1|GT731258QHX03710.1|GT731258VDZ58712.1|GT731258ASG44913.1|GT73
Hit ID E-Value Query Start Query End Hit Start Hit End
QSB97135.1 2.60e-184 1 258 1 258
QSB81332.1 2.60e-184 1 258 1 258
QHX03710.1 7.45e-184 1 258 1 258
VDZ58712.1 2.14e-183 1 258 1 258
ASG44913.1 2.14e-183 1 258 1 258

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Created with Snap122538516477901031161291411541671801932062192322458257sp|P27241|RFAZ_ECOLI3252sp|P26473|RFAZ_SALTY
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27241 1.42e-58 8 257 12 264
Lipopolysaccharide core biosynthesis protein RfaZ OS=Escherichia coli (strain K12) OX=83333 GN=rfaZ PE=4 SV=2
P26473 8.60e-54 3 252 7 259
Lipopolysaccharide core biosynthesis protein RfaZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaZ PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000007 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000108_00539.