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CAZyme Information: MGYG000000118_02627

You are here: Home > Sequence: MGYG000000118_02627

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species NSJ-38 sp902363445
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; NSJ-38; NSJ-38 sp902363445
CAZyme ID MGYG000000118_02627
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
428 47058.22 4.4096
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000118 3130551 Isolate Canada North America
Gene Location Start: 134740;  End: 136026  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000118_02627.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 1.07e-07 375 424 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476 LysM 1.94e-07 377 425 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
smart00257 LysM 4.20e-06 376 424 1 44
Lysin motif.
PRK11198 PRK11198 6.18e-05 367 426 90 147
LysM domain/BON superfamily protein; Provisional
COG1388 LysM 0.004 367 427 59 113
LysM repeat [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNM04407.1 1.11e-282 1 428 1 428
ANU47723.1 1.11e-38 2 425 10 477
QQR03379.1 1.11e-38 2 425 10 477
QDW72726.1 1.35e-37 2 425 4 348
QEI31374.1 1.65e-37 2 425 4 373

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000014 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000118_02627.