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CAZyme Information: MGYG000000127_04131
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Catenibacillus sp902363555 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Catenibacillus; Catenibacillus sp902363555 | |||||||||||
| CAZyme ID | MGYG000000127_04131 | |||||||||||
| CAZy Family | GH39 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 397578; End: 400106 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH39 | 349 | 791 | 1e-56 | 0.9860788863109049 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam01229 | Glyco_hydro_39 | 1.89e-37 | 338 | 794 | 3 | 446 | Glycosyl hydrolases family 39. |
| COG2207 | AraC | 5.52e-27 | 152 | 260 | 14 | 122 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| smart00342 | HTH_ARAC | 9.56e-25 | 174 | 257 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
| COG3664 | XynB | 1.74e-24 | 365 | 836 | 1 | 425 | Beta-xylosidase [Carbohydrate transport and metabolism]. |
| pfam12833 | HTH_18 | 2.00e-21 | 180 | 259 | 1 | 81 | Helix-turn-helix domain. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGF58080.1 | 1.79e-148 | 9 | 833 | 18 | 796 |
| AQR96769.1 | 2.32e-145 | 9 | 833 | 18 | 796 |
| AQR96727.1 | 8.91e-117 | 1 | 836 | 6 | 791 |
| BBG22497.1 | 1.36e-114 | 8 | 836 | 16 | 806 |
| QQQ92191.1 | 4.05e-108 | 15 | 833 | 20 | 794 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4M29_A | 2.93e-31 | 337 | 836 | 10 | 497 | Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15] |
| 4EKJ_A | 5.28e-31 | 337 | 836 | 10 | 497 | ChainA, Beta-xylosidase [Caulobacter vibrioides] |
| 6UQJ_A | 3.46e-29 | 351 | 693 | 29 | 366 | Crystalstructure of the GH39 enzyme from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306] |
| 1PX8_A | 2.56e-26 | 353 | 807 | 18 | 451 | Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum] |
| 3OOU_A | 6.27e-13 | 160 | 258 | 7 | 105 | Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P23552 | 9.09e-27 | 338 | 832 | 9 | 471 | Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1 |
| P36906 | 1.90e-24 | 353 | 807 | 18 | 451 | Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynB PE=1 SV=1 |
| O30360 | 8.05e-24 | 351 | 807 | 19 | 451 | Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) OX=1094508 GN=xynB PE=3 SV=1 |
| Q5HJR8 | 3.27e-23 | 24 | 809 | 27 | 714 | Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2 |
| Q6GD21 | 5.70e-23 | 24 | 809 | 27 | 714 | Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000034 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |