CAZyme Information: MGYG000000140_01615

Basic Information

• Species: UMGS1375 sp900066615
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; UMGS1375; UMGS1375 sp900066615
• CAZyme ID: MGYG000000140_01615
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
915	MGYG000000140_6|CGC3	103736.35	4.7926

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000140	3539979	Isolate	United Kingdom	Europe

• Gene Location: Start: 109996; End: 112743 Strand: +

Full Sequence      

MIRDLTIEYRKNPIGIDEKPRFSWKLESEKQDVVQTNYQIQVVSGGRLMWDSGRVKSDQS
VLVPYKGAALKEMTVYQVQVSVWDNYGELGQVTGNFETGLMREENWNAKWITHTLPAEET
ACPVFVRSFSLDRPVKRARLYATACGVYEAFINGRKTGDLFLAPGWTSYHHRLQYQTYDI
TELLEKDNEITVTVGNGWYKGELGFDARPNLYGDRTALLAMVRIEYEDGEIICIGTDTDW
HVETGEILFSEIYHGEIQDYTKERRQVGKAVLFEHTDDIGQIVAQESEPVRVTKRFDVKE
RIVTPKGELVFDFGQNMAGLVEIRLPKLIGDRLVIRYAETLDKDGNFYTENLRTARCTDT
FVYGEKQVGMLVMPHFTFHGFRYICVEGAGTETEASDFTACAMHTDMQPTGTFTSDNTLV
NQLQSNIQWGQRGNFLDVPTDCPQRDERLGWTGDAQVFCGTASYNFHTALFFRKWLRDMA
AETTPEWGVPHVVPNILGNQAGAAAWSDAATIIPWTIYKVYGDKEMLAEQFPMMKNWVDY
IHARVSKNGLWQSGFQYGDWLALDIESGSTDRTGGTDKYLVANAYYAYSTRIVRDAADAL
GYAEEAKAYGDLYEKIVEAIHVEYVTRSGRMVSETQTACVLMLYFDLIKPEFRNRILETL
ELNIGAHHNHLTTGFVGTPYLCHCLSENGLHGLADEIFMKEDFPGWLYAVKKGATTIWER
WNSILPNGDFDESGMNSLNHYAYGSIGSWLYEKVAGIRCMEPGYKKIRIQPTLTKGMTEV
SAAYESIYGTIVSAWSCREGKICVDVQIPVNTTAVIQLPEKEAEFTVGSGRYHYEYKTDT
NLKFEKYSLESTLGELVAEELGRNMFEEMMPGMLEDPLIQFALSMTISDLLVQDAQAKPM
YLAVIDALNATNSKL

Enzyme Prediction     

EC	3.2.1.40

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	304	818	7e-173	0.9920634920634921
CBM67	108	263	3.9e-22	0.8352272727272727

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	9.58e-129	410	754	3	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	3.81e-58	134	294	2	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	1.59e-29	304	404	3	102	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	7.51e-18	756	832	1	77	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRT30265.1	0.0	4	909	5	905
QLG40468.1	0.0	2	911	3	909
QRT50983.1	0.0	2	910	3	911
VCV22853.1	0.0	2	910	3	911
CBL11431.1	0.0	2	910	3	911

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6GSZ_A	7.19e-174	2	837	4	866	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
3W5M_A	9.26e-171	6	837	10	1031	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6I60_A	2.05e-142	4	847	34	927	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KNB2	9.62e-177	3	824	36	884	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
Q82PP4	1.00e-169	6	819	10	995	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
P9WF03	2.73e-158	12	845	42	893	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KPL4	3.07e-102	5	840	35	928	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000052	0.000001	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000140_01615.