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CAZyme Information: MGYG000000143_02472
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Turicibacter sanguinis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Haloplasmatales_A; Turicibacteraceae; Turicibacter; Turicibacter sanguinis | |||||||||||
| CAZyme ID | MGYG000000143_02472 | |||||||||||
| CAZy Family | CBM66 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 26234; End: 28255 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 338 | 563 | 4.2e-39 | 0.7772277227722773 |
| CBM66 | 42 | 197 | 1.3e-23 | 0.9870967741935484 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| smart00656 | Amb_all | 1.24e-24 | 340 | 563 | 19 | 183 | Amb_all domain. |
| COG3866 | PelB | 2.01e-21 | 241 | 530 | 28 | 254 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam00544 | Pec_lyase_C | 1.03e-17 | 341 | 563 | 41 | 208 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| pfam13385 | Laminin_G_3 | 4.37e-06 | 82 | 175 | 17 | 107 | Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. |
| pfam06439 | DUF1080 | 3.64e-05 | 41 | 197 | 9 | 179 | Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QJS18636.1 | 0.0 | 1 | 673 | 1 | 673 |
| CDM70269.1 | 7.58e-230 | 124 | 673 | 1 | 552 |
| ANY65996.1 | 1.52e-229 | 37 | 670 | 38 | 685 |
| ANY66001.1 | 1.78e-224 | 37 | 670 | 37 | 708 |
| QNR67784.1 | 3.73e-221 | 32 | 673 | 35 | 682 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5GT5_A | 5.44e-173 | 240 | 673 | 2 | 446 | Structuralbasis of the specific activity and thermostability of pectate lyase (pelN) from Paenibacillus sp. 0602 [Paenibacillus sp. 0602],5GT5_B Structural basis of the specific activity and thermostability of pectate lyase (pelN) from Paenibacillus sp. 0602 [Paenibacillus sp. 0602] |
| 3ZSC_A | 5.15e-20 | 340 | 521 | 71 | 210 | Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
| 1VBL_A | 1.26e-16 | 248 | 528 | 15 | 305 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
| 5AMV_A | 4.72e-15 | 250 | 534 | 17 | 299 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 1BN8_A | 5.41e-15 | 250 | 534 | 38 | 320 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| D3JTC2 | 4.00e-141 | 240 | 579 | 31 | 376 | Pectate lyase B OS=Paenibacillus amylolyticus OX=1451 GN=pelB PE=1 SV=1 |
| Q9WYR4 | 2.80e-20 | 340 | 521 | 98 | 237 | Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1 |
| B1L969 | 4.93e-20 | 340 | 521 | 96 | 235 | Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1 |
| P39116 | 2.96e-14 | 250 | 534 | 38 | 320 | Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1 |
| P04960 | 2.34e-12 | 253 | 570 | 47 | 310 | Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000547 | 0.998634 | 0.000267 | 0.000187 | 0.000165 | 0.000161 |