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CAZyme Information: MGYG000000145_01366

You are here: Home > Sequence: MGYG000000145_01366

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lacrimispora sp902363735
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lacrimispora; Lacrimispora sp902363735
CAZyme ID MGYG000000145_01366
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
517 MGYG000000145_2|CGC4 58737.96 6.206
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000145 4646417 Isolate United Kingdom Europe
Gene Location Start: 414610;  End: 416163  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000145_01366.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 106 486 8.9e-73 0.9261538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.62e-97 81 476 83 488
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.82e-30 183 394 48 250
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 5.49e-27 80 498 36 392
polygalacturonase/glycoside hydrolase family protein
PLN02218 PLN02218 1.46e-26 80 399 67 359
polygalacturonase ADPG
PLN03003 PLN03003 4.55e-25 81 427 24 326
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SET55359.1 0.0 1 517 1 517
VCV21973.1 1.05e-239 1 514 1 516
CBL09361.1 1.05e-239 1 514 1 516
CBL11994.1 1.49e-239 1 514 1 516
QNM03367.1 1.03e-232 1 512 1 513

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 5.71e-44 81 376 28 343
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 5.90e-34 69 502 36 452
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 7.88e-24 97 458 26 361
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 1.63e-19 46 410 115 516
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4MR0_A 4.97e-08 68 164 103 203
Crystalstructure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6],4MR0_B Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 6.39e-52 222 445 23 247
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 9.34e-43 80 465 62 431
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P43212 2.82e-26 51 394 31 346
Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1
Q7M1E7 1.00e-24 51 508 31 441
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1
Q8RY29 2.24e-24 80 397 67 357
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000066 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000145_01366.