dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000160_01385

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Basic Information help

Species

Collinsella sp003479805

Lineage

Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp003479805

CAZyme ID

MGYG000000160_01385

CAZy Family

CBM32

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1792		193061.73	4.3985

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000160	2098512	Isolate	China	Asia

Gene Location

Start: 73836; End: 79214 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000000160_01385.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
CBM32	117	246	9.8e-18	0.9354838709677419

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00754	F5_F8_type_C	4.50e-12	119	217	4	103	F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam09479	Flg_new	1.61e-10	1668	1730	1	65	Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.
cd14791	GH36	5.33e-09	623	817	4	182	glycosyl hydrolase family 36 (GH36). GH36 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-galactosidase, alpha-N-acetylgalactosaminidase, stachyose synthase, and raffinose synthase. All GH36 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH36 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.
NF033188	internalin_H	2.84e-07	1694	1769	438	525	InlH/InlC2 family class 1 internalin. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin H (InlH), or internalin C2, two class 1 (LPXTG-type) internalins that are closely related, one apparently derived from the other through a recombination event.
pfam02065	Melibiase	2.08e-06	586	789	1	190	Melibiase. Glycoside hydrolase families GH27, GH31 and GH36 form the glycoside hydrolase clan GH-D. Glycoside hydrolase family 36 can be split into 11 families, GH36A to GH36K. This family includes enzymes from GH36A-B and GH36D-K and from GH27.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QCC62414.1	0.0	265	1792	30	1657
QQA11075.1	6.02e-168	280	1335	134	1205
ALG48827.1	1.58e-167	280	1335	134	1205
AXH52486.1	3.00e-167	280	1335	134	1205
AQW23840.1	3.00e-167	280	1335	134	1205

PDB Hits help

has no PDB hit.

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000314	0.998904	0.000181	0.000225	0.000198	0.000175

TMHMM Annotations download full data without filtering help

start	end
7	29
1766	1788