dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000174_02462

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Basic Information help

Species

Parabacteroides faecis

Lineage

Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides faecis

CAZyme ID

MGYG000000174_02462

CAZy Family

GH106

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1201	MGYG000000174_6\|CGC4	136582.55	6.703

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000174	6515019	Isolate	China	Asia

Gene Location

Start: 104358; End: 107963 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000000174_02462.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH106	36	750	1.3e-85	0.8300970873786407

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17132	Glyco_hydro_106	5.28e-29	196	688	354	870	alpha-L-rhamnosidase.
pfam02837	Glyco_hydro_2_N	1.89e-06	1094	1177	56	142	Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction.
cd04082	CBM35_pectate_lyase-like	0.007	898	944	41	108	Carbohydrate Binding Module family 35 (CBM35), pectate lyase-like; appended mainly to enzymes that bind mannan (Man), xylan, glucuronic acid (GlcA) and possibly glucans. This family includes carbohydrate binding module family 35 (CBM35) domains that are non-catalytic carbohydrate binding domains that are appended mainly to enzymes that bind mannan (Man), xylan, glucuronic acid (GlcA) and possibly glucans. Included in this family are CBM35s of pectate lyases, including pectate lyase 10A from Cellvibrio japonicas, these enzymes release delta-4,5-anhydrogalaturonic acid (delta4,5-GalA) from pectin, thus identifying a signature molecule for plant cell wall degradation. CBM35s are unique in that they display conserved specificity through extensive sequence similarity but divergent function through their appended catalytic modules. They are known to bind alpha-D-galactose (Gal), mannan (Man), xylan, glucuronic acid (GlcA), a beta-polymer of mannose, and possibly glucans, forming four subfamilies based on general ligand specificities (galacto, urono, manno, and gluco configurations). In contrast to most CBMs that are generally rigid proteins, CBM35 undergoes significant conformational change upon ligand binding. Some CBM35s bind their ligands in a calcium-dependent manner, especially those binding uronic acids.

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
BBL12449.1	1	1199	1	1200
BBL09655.1	1	1199	1	1200
BBL01784.1	1	1199	1	1200
QGY44259.1	35	1197	40	1194
QGQ95144.1	26	1199	31	1237

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5MQM_A	8.90e-08	135	487	303	686	Glycosidehydrolase BT_0986 [Bacteroides thetaiotaomicron],5MQN_A Glycoside hydrolase BT_0986 [Bacteroides thetaiotaomicron]
5MWK_A	8.90e-08	135	487	303	686	Glycosidehydrolase BT_0986 [Bacteroides thetaiotaomicron]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KNA8	2.18e-26	34	1174	28	1093	Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22040 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000274	0.999110	0.000171	0.000160	0.000146	0.000137

TMHMM Annotations help

There is no transmembrane helices in MGYG000000174_02462.