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CAZyme Information: MGYG000000176_00903

You are here: Home > Sequence: MGYG000000176_00903

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Muricomes oroticus
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Muricomes; Muricomes oroticus
CAZyme ID MGYG000000176_00903
CAZy Family PL42
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
887 98582.53 4.4197
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000176 5921397 Isolate China Asia
Gene Location Start: 126298;  End: 128961  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000176_00903.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL42 483 776 2.4e-88 0.9932432432432432

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam15892 BNR_4 3.25e-74 505 760 2 269
BNR repeat-containing family member. BNR_4 is a family which carries the unique sequence motif SxDxGxTW which is so characteristic of the repeats of the BNR family, pfam02012. It is unclear whether or not this unit is repeated throughout the sequences of this family, but if it is then the family is likely to be bacterial neuraminidase.
pfam13517 VCBS 7.84e-04 311 362 1 56
Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).
pfam13517 VCBS 0.008 266 318 1 57
Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDB80652.1 3.53e-120 470 879 94 505
AWW30209.1 1.34e-119 465 859 26 414
AGA76772.1 3.91e-118 465 859 25 413
QDH77890.1 7.98e-118 472 859 33 414
QIK53697.1 9.36e-117 474 859 24 405

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5MUK_A 2.78e-102 473 887 25 431
GlycosideHydrolase BT3686 [Bacteroides thetaiotaomicron VPI-5482],5MUL_A Glycoside Hydrolase BT3686 bound to Glucuronic Acid [Bacteroides thetaiotaomicron VPI-5482]
5MUM_A 8.77e-100 473 883 30 432
GlycosideHydrolase BACINT_00347 [Bacteroides intestinalis DSM 17393]
5MVH_A 4.80e-98 470 879 22 423
GlycosideHydrolase BACCELL_00856 [Bacteroides cellulosilyticus DSM 14838]
4IRT_A 8.56e-96 473 858 8 385
Crystalstructure of a putative neuraminidase (BACOVA_03493) from Bacteroides ovatus ATCC 8483 at 1.74 A resolution [Bacteroides ovatus ATCC 8483]
7ESL_A 2.82e-25 483 747 23 303
ChainA, L-rhamnose-alpha-1,4-D-glucuronate lyase [Fusarium oxysporum]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000269 0.999027 0.000197 0.000170 0.000165 0.000148

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000176_00903.