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CAZyme Information: MGYG000000187_01648
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Lachnospira sp003537285 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp003537285 | |||||||||||
| CAZyme ID | MGYG000000187_01648 | |||||||||||
| CAZy Family | PL11 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaR | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2282; End: 5152 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL11 | 699 | 943 | 3.2e-17 | 0.41089108910891087 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2207 | AraC | 2.33e-13 | 166 | 235 | 15 | 84 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| pfam02311 | AraC_binding | 1.17e-09 | 26 | 149 | 19 | 134 | AraC-like ligand binding domain. This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190. |
| smart00342 | HTH_ARAC | 2.05e-08 | 187 | 235 | 1 | 49 | helix_turn_helix, arabinose operon control protein. |
| COG4753 | YesN | 3.91e-07 | 105 | 236 | 307 | 437 | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]. |
| pfam12833 | HTH_18 | 1.04e-06 | 194 | 237 | 2 | 45 | Helix-turn-helix domain. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ACM61423.1 | 3.94e-216 | 289 | 951 | 7 | 664 |
| ADQ05930.1 | 7.87e-216 | 289 | 951 | 7 | 664 |
| ADL43373.1 | 4.44e-215 | 289 | 951 | 7 | 664 |
| AGC68608.1 | 7.95e-211 | 289 | 951 | 7 | 663 |
| ANW98952.1 | 7.95e-211 | 289 | 951 | 7 | 663 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2Z8R_A | 7.98e-07 | 545 | 822 | 120 | 384 | Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O33813 | 9.71e-08 | 35 | 239 | 51 | 239 | Lactose operon transcription activator OS=Staphylococcus xylosus OX=1288 GN=lacR PE=4 SV=1 |
| O31526 | 4.49e-06 | 545 | 822 | 157 | 421 | Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000044 | 0.000002 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |