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CAZyme Information: MGYG000000220_01899

You are here: Home > Sequence: MGYG000000220_01899

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species AM07-15 sp003477405
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Butyricicoccaceae; AM07-15; AM07-15 sp003477405
CAZyme ID MGYG000000220_01899
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
329 34649.55 6.9253
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000220 3018710 Isolate China Asia
Gene Location Start: 46447;  End: 47436  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000220_01899.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 5.23e-13 188 232 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 9.25e-12 189 230 1 42
Lysin motif.
pfam01476 LysM 1.65e-11 190 230 1 40
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG1388 LysM 4.13e-06 169 230 49 108
LysM repeat [Cell wall/membrane/envelope biogenesis].
COG0739 NlpD 5.22e-05 187 230 1 44
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCI59227.1 3.80e-207 1 329 1 325
BCK82957.1 9.08e-108 1 232 1 239
CBK91936.1 2.49e-56 1 232 1 303
QJU19025.1 9.26e-54 1 228 215 440
QQR02580.1 2.88e-45 1 202 209 411

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39800 3.16e-06 185 244 156 213
N-acetylmuramoyl-L-alanine amidase XlyA OS=Bacillus subtilis (strain 168) OX=224308 GN=xlyA PE=1 SV=1
Q01837 8.89e-06 190 239 314 362
Probable endopeptidase p60 OS=Listeria ivanovii OX=1638 GN=iap PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000062 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000220_01899.