CAZyme Information: MGYG000000221_02700

Basic Information

• Species: Parabacteroides bouchesdurhonensis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides bouchesdurhonensis
• CAZyme ID: MGYG000000221_02700
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
993		110391.86	8.3986

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000221	3481201	Isolate	China	Asia

• Gene Location: Start: 30706; End: 33687 Strand: -

Full Sequence      

MKKIYFWVLCCFCVCSGWAQTEPALMANVDKEKMNHWVDSVFDAMSYDERIGQLFMVIAE
PKSDMRNMQKLMRYVNEIKVGGVLFHKGNPVTQAEVTNRLQKASRVPLFISLDGEWGLSM
RLSNTTRFPKNMMLGAIEDNTLIEEYGKEVARQCREMGIHINFAPDLDVNSNVDNPVIGL
RSFGENPDMVADKGIAYARGLESKGVLSVSKHFPGHGDTSDDSHKTLPSVFHSMARLDSV
ELLPFKRYIYDGFSGVMTGHLYIPAIDKTPNRPASLSHAVVTDLLKEKIGFQGLCFTDAL
AMKGATTKKTDNPSVMALLAGNDVLLAPAAPINDFTAVKEAINEGILSLEEIEAKCIKIL
QYKYIVGLNQYRPIDTQDLMKRLNSPHAAWLAAKLNSEAITVLKNTSDILPLKQLGKKKI
AALAIGDDAGNEFQTMLNRYDSIASFSIGRNASAAAIQKVYNQLNNYDIIICSVHTVRIP
ESLPLRQLSAKKELVYAFFTLPYFCKDYKNSIQKAKALVMGYENTPLAQEYAAQVIFGGI
GAKGKLPVSIPGLYYSGTGVFTEKTRLGYHEPEEVGANAVRLDVIESIVSEGLEEKAFPG
CQVLVAKDGMIIYDKSFGYYDFDKSRIVTETSVYDLASASKASGTLLAVMKAYDEKKFTL
NNKIADFVPALKGSNKQDLSIKELLYHQSGLISSINFYLKAIDKDSYTGSLYSNAKNAVH
PIRFDAKTYVRNDFSYLPDLVSDKKKPGFTTEVARNFYVSDSFKDSIMQSIVDSRLGKRG
KYVYSCINFILLKMMVENLMDKPMDRLLHDDFYAGLGAWHVTYTPLKIMDTLQIVPTEDD
RFVRRQLLRGYVHDEAAAFQGGVSGNAGLFSNANDLAKVLQLFLNQGVYGGEQYLSMETC
RLFTQSKSPTSRRGLGFDKPAIGSPQSSPCAPQAPASVYGHTGFTGTCFWVDPENQLIYI
FLSNRVNPSRANNKLGSLNIRPRIQEAIYKAIK

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	326	1.3e-56	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	9.72e-72	48	360	3	314	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	2.80e-70	45	431	1	366	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	3.88e-55	570	993	28	432	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	8.13e-40	585	968	1	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	2.02e-34	572	987	28	385	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT21701.1	0.0	1	992	1	991
QJE31090.1	0.0	1	992	1	991
BBK92319.1	0.0	1	992	1	991
QIX64335.1	0.0	1	992	1	991
QUT55768.1	0.0	1	992	1	991

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	1.82e-62	17	569	20	632	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	7.14e-62	39	569	10	606	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	9.55e-62	17	569	24	636	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A	6.82e-60	44	550	10	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	4.64e-55	71	363	50	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	9.96e-62	17	569	20	632	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	4.02e-47	70	413	54	426	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	6.04e-41	572	965	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	3.69e-40	572	965	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q7WUL3	1.78e-39	37	412	18	398	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.004342	0.706360	0.288332	0.000357	0.000289	0.000303

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000221_02700.