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CAZyme Information: MGYG000000224_00072

You are here: Home > Sequence: MGYG000000224_00072

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides sp003545565
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp003545565
CAZyme ID MGYG000000224_00072
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
464 MGYG000000224_1|CGC2 52373.66 5.8161
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000224 3747034 Isolate China Asia
Gene Location Start: 87730;  End: 89124  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000224_00072.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 187 447 2.2e-42 0.76

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.46e-12 200 395 230 421
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.19e-10 191 445 88 307
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 4.67e-05 171 445 115 381
polygalacturonase
PLN02793 PLN02793 8.39e-05 213 377 229 396
Probable polygalacturonase
pfam13229 Beta_helix 0.004 191 306 3 109
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALJ62050.1 1.01e-284 19 464 16 461
QUU00181.1 1.61e-284 1 464 1 464
QUT92200.1 2.04e-284 19 464 16 461
QUT34117.1 1.08e-282 1 464 1 464
QUT85436.1 9.78e-276 1 464 1 461

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8MW78 1.14e-08 192 443 254 478
Probable endopolygalacturonase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaD PE=3 SV=1
Q2UT29 1.14e-08 192 443 254 478
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2
Q7M1E7 7.44e-06 214 330 186 294
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000479 0.997962 0.001009 0.000168 0.000174 0.000169

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000224_00072.