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CAZyme Information: MGYG000000240_00892

You are here: Home > Sequence: MGYG000000240_00892

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Amedibacterium intestinale
Lineage Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium; Amedibacterium intestinale
CAZyme ID MGYG000000240_00892
CAZy Family GH73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
646 71470.36 8.7005
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000240 2625986 Isolate China Asia
Gene Location Start: 7899;  End: 9839  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000240_00892.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH73 341 447 3.4e-17 0.890625

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd14256 Dockerin_I 2.04e-14 589 643 2 56
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
COG4193 LytD 9.39e-13 239 464 22 241
Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].
pfam00404 Dockerin_1 2.86e-10 589 644 1 56
Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.
pfam01832 Glucosaminidase 1.33e-09 343 402 8 77
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyze peptidoglycan.
COG1705 FlgJ 2.50e-05 338 404 53 136
Flagellum-specific peptidoglycan hydrolase FlgJ [Cell wall/membrane/envelope biogenesis, Cell motility].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCT44532.1 1.78e-211 1 623 1 610
QNM11023.1 3.89e-170 5 621 6 607
QJA02388.1 8.24e-115 155 623 94 564
QSI26463.1 4.73e-113 155 623 94 562
ANU71450.1 1.69e-106 155 623 94 564

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4Q2W_A 5.60e-25 195 460 59 290
CrystalStructure of pneumococcal peptidoglycan hydrolase LytB [Streptococcus pneumoniae TIGR4]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P59205 5.77e-24 195 460 427 658
Putative endo-beta-N-acetylglucosaminidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=lytB PE=1 SV=1
P59206 6.47e-24 195 460 471 702
Putative endo-beta-N-acetylglucosaminidase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=lytB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.461182 0.459759 0.077091 0.000621 0.000425 0.000909

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000240_00892.