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CAZyme Information: MGYG000000243_02960

You are here: Home > Sequence: MGYG000000243_02960

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola massiliensis
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola massiliensis
CAZyme ID MGYG000000243_02960
CAZy Family GT2
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
365 MGYG000000243_26|CGC1 43280.2 9.0111
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000243 3947824 Isolate China Asia
Gene Location Start: 11530;  End: 12627  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000243_02960.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd11579 Glyco_tran_WbsX 0.0 8 361 1 347
Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases. Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity.
pfam14307 Glyco_tran_WbsX 0.0 10 356 1 312
Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.
COG3754 RgpF 5.62e-12 10 123 95 193
Lipopolysaccharide biosynthesis protein [Cell wall/membrane/envelope biogenesis].
cd11573 GH99_GH71_like 2.04e-11 57 349 2 258
Glycoside hydrolase families 71, 99, and related domains. This superfamily of glycoside hydrolases contains families GH71 and GH99 (following the CAZY nomenclature), as well as other members with undefined function and specificity.
cd11578 GH99_GH71_like_1 2.55e-05 57 358 25 307
Uncharacterized glycoside hydrolase family 99-like domain. This family of putative glycoside hydrolases resembles glycosyl hydrolase families 71 and 99 (following the CAZY nomenclature) and may share a similar catalytic site and mechanism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT58954.1 3.96e-135 1 360 1 365
QUB58163.1 1.73e-128 9 361 4 365
QUB55559.1 1.73e-128 9 361 4 365
QXM11003.1 7.48e-124 7 360 3 360
QXE90911.1 7.48e-124 7 360 3 360

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C7J1 5.25e-80 10 360 92 433
Uncharacterized protein WxcX OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=wxcX PE=4 SV=1
B0RVK2 1.03e-79 10 360 92 433
Uncharacterized protein WxcX OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=wxcX PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000033 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000243_02960.