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CAZyme Information: MGYG000000248_01286

You are here: Home > Sequence: MGYG000000248_01286

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Weissella cibaria
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Weissella; Weissella cibaria
CAZyme ID MGYG000000248_01286
CAZy Family CBM50
CAZyme Description putative transglycosylase IsaA
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
236 23839.13 3.6908
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000248 2506217 Isolate China Asia
Gene Location Start: 18582;  End: 19292  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000248_01286.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 7.47e-08 27 70 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 3.51e-06 27 70 1 44
Lysin motif.
pfam01476 LysM 6.71e-05 28 50 1 23
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
PRK13914 PRK13914 0.002 1 75 1 76
invasion associated endopeptidase.
PRK10811 rne 0.009 80 130 933 983
ribonuclease E; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASS51962.1 2.29e-142 1 236 1 236
APS27111.1 2.29e-142 1 236 1 236
APU62508.1 2.29e-142 1 236 1 236
AVO67466.1 2.29e-142 1 236 1 236
APU64660.1 2.29e-142 1 236 1 236

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q4L980 3.20e-28 155 236 156 238
Probable transglycosylase IsaA OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=isaA PE=3 SV=1
A7IY64 2.73e-27 151 236 157 243
Probable transglycosylase IsaA OS=Staphylococcus xylosus OX=1288 GN=isaA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000234 0.999059 0.000178 0.000190 0.000180 0.000155

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000248_01286.