CAZyme Information: MGYG000000249_01282

Basic Information

• Species: Mediterraneibacter faecis
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter; Mediterraneibacter faecis
• CAZyme ID: MGYG000000249_01282
• CAZy Family: GH73
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
967	MGYG000000249_4|CGC2	107946.91	4.4199

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000249	3112009	Isolate	China	Asia

• Gene Location: Start: 191001; End: 193904 Strand: +

Full Sequence      

MKSLWKKYTSLFLLVTLLFTSLPIQVKAEESENPSNSEVSEEIEKQQTNQEDTLIENSGE
ESENNIEGQNTTEESESLEQQSENESSSSNGEEEQRLNYIYIEKPYLQTPEIQNVAVSWG
DGTEEIDAMTANVNGPFGEEIWTATKKSEEIYLFEKAYDEQAKGIYQMESLNLTIHGEVH
TYKLSELGIEAQFGVDEEYEGIEELKPVGKEEDTNVAEIATYSIDESGDVVEQESIGDAI
EQAAQDTPAVLSNEENARASSKIVVALDPGHDSKHVGASANDVREEVLTLKIAQYCKAEL
EKYSGVSVYMTRTTADCPYPGGSSSYDISKRVEAAANAGADIYVSIHLNSATSTSANGAE
VIYPNSSWKPQVGADGKKMAESIEKELVGIGLNERSIYSKNTTVGETYPDGSVSDYYTVQ
ISAKEHGIPGIIVEHAFVTNKSDVNNYLNNEAGLEKLGVADATGIAKYYGLTKGANWEQD
SKGWRYKSGSGYLKNTWYQIDGSWYRFGEDGYMKTGFQKINGYTYYLGTSSDGAMKTGWQ
KIDNAWYYFGDVNDGVMRTGWQYIGSSWYYFGDVNDGVMKTGWCKVATTWYYFGSVNDGI
MKTGWQYIGSDWYYFGSSNQGGMRTGWQQLGSNWYYFGDSNSGAMRSGLTKAGKYWYYLG
EAGSGSMLTGWQMIKDKKYYFGPANDGVMRTGWQQFGSNWYYFGDADDGSMKTGWCQIAS
TWYYFGNSNDGVMKTGWQYIGSDWYYFGNENEGGMRTGWQEIAGVWYYFRSGGAYDASMG
HTPKNTNVPEGTYLIEGKTEVTVNQMVNYFKQSKKTYPKDALGKGGASTIEQFCQIYYEE
AEKENIKAEVAFVQSMKETGWLQFGGSVKIEQYNFAGLGSTTAGVTGETFHNVREGVRAQ
IQHLKAYGSTQQLNQKCVDTRFQYVTRGSSIYVEWLGIPNNPYGKGWAADDGYGVKIVNM
IKNMKKL

Enzyme Prediction     

No EC number prediction in MGYG000000249_01282.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH73	834	965	3.4e-18	0.9765625

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
NF033930	pneumo_PspA	3.72e-42	534	774	440	641	pneumococcal surface protein A. The pneumococcal surface protein proteins, found in Streptococcus pneumoniae, are repetitive, with patterns of localized high sequence identity across pairs of proteins given different specific names that recombination may be presumed. This protein, PspA, has an N-terminal region that lacks a cross-wall-targeting YSIRK type extended signal peptide, in contrast to the closely related choline-binding protein CbpA which has a similar C-terminus but a YSIRK-containing region at the N-terminus.
NF033930	pneumo_PspA	1.81e-41	494	724	442	635	pneumococcal surface protein A. The pneumococcal surface protein proteins, found in Streptococcus pneumoniae, are repetitive, with patterns of localized high sequence identity across pairs of proteins given different specific names that recombination may be presumed. This protein, PspA, has an N-terminal region that lacks a cross-wall-targeting YSIRK type extended signal peptide, in contrast to the closely related choline-binding protein CbpA which has a similar C-terminus but a YSIRK-containing region at the N-terminus.
NF033930	pneumo_PspA	3.76e-41	477	680	445	635	pneumococcal surface protein A. The pneumococcal surface protein proteins, found in Streptococcus pneumoniae, are repetitive, with patterns of localized high sequence identity across pairs of proteins given different specific names that recombination may be presumed. This protein, PspA, has an N-terminal region that lacks a cross-wall-targeting YSIRK type extended signal peptide, in contrast to the closely related choline-binding protein CbpA which has a similar C-terminus but a YSIRK-containing region at the N-terminus.
cd02696	MurNAc-LAA	7.38e-41	264	466	1	172	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.
NF033838	PspC_subgroup_1	1.24e-36	494	680	485	658	pneumococcal surface protein PspC, choline-binding form. The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRT50579.1	7.58e-97	111	473	118	497
ASM68313.1	1.44e-88	94	967	45	1052
CBL26238.1	2.91e-86	773	967	40	256
QNM00238.1	5.52e-81	89	959	35	613
QRO35993.1	7.33e-74	89	473	99	478

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5J72_A	1.82e-08	214	465	405	633	ChainA, Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp6 [Clostridioides difficile 630],5J72_B Chain B, Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp6 [Clostridioides difficile 630]
5EMI_A	1.10e-06	260	468	2	177	ChainA, Cell wall hydrolase/autolysin [Nostoc punctiforme PCC 73102]
1JWQ_A	2.67e-06	264	468	3	175	Structureof the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus [Paenibacillus polymyxa]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O51481	1.02e-18	794	961	25	192	Uncharacterized protein BB_0531 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=BB_0531 PE=3 SV=1
Q02114	1.62e-12	247	469	302	495	N-acetylmuramoyl-L-alanine amidase LytC OS=Bacillus subtilis (strain 168) OX=224308 GN=lytC PE=1 SV=1
P37134	2.50e-11	263	475	2	181	N-acetylmuramoyl-L-alanine amidase CwlM OS=Bacillus licheniformis OX=1402 GN=cwlM PE=3 SV=1
Q06320	6.29e-11	263	473	2	179	Sporulation-specific N-acetylmuramoyl-L-alanine amidase OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlC PE=1 SV=1
O48471	1.11e-09	264	473	4	185	Endolysin OS=Bacillus phage SPP1 OX=10724 GN=25 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000298	0.998969	0.000230	0.000164	0.000156	0.000140

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000249_01282.