CAZyme Information: MGYG000000287_02539

Basic Information

• Species: Robinsoniella sp900539655
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900539655
• CAZyme ID: MGYG000000287_02539
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
2217	MGYG000000287_35|CGC1	243824.69	4.6935

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000287	7249439	MAG	Sweden	Europe

• Gene Location: Start: 1218; End: 7871 Strand: +

Full Sequence      

MKLRRRLLSCILATAVTVTSITPITAAASQGSMQIGSLKVNYLSEPLGIDDAQPVFSWIL
ASDGYDKGQSAYRIIVSSTREGAEKHEGDVWDSGKTENENNYNITYQGSTLLSRTPYYWA
VQVWDEDGNETGWSEVSSFETGIMSADEWNGEWVGIKNTDMNFQGANWIWRRDGSDFSGA
PEGIQYFRKGFRTDKAKTISNVNIGITADDEYELYVNGQKAGENGGVDSWKNGKLYDVTN
LISAEGENVIAASAHNTSRGYAGLLAKIEVLYNDGTKDTYVTDNTWKLSKTNEAGWSGKD
YDDSKWIAPDQSEPYGNSPWNSGVSPNAENAFAATVLRKEFKTEKGAIKDAKAYVSGLGF
FELKINGQLPDDTLLNPANTQYNQTSLYRVFDVTKLVKEGKNAIGVELGNSFYNETCSVW
NWQDAKWRDAPKLRMEIEIEYENGEKESVVTDESWKATKEGPITTNSIYYGETYDARKEL
NGFDLINYDDTNWGAVQLMDAPEGKLKAQIMEPIRRTKEMQPSDITKLDNGSYVLTIPEM
LAGWIKLDIKGAGAGDKVTITYGEKLNADGQVQKLGGKDGVNSGWWPRAYNQQDNYICKG
GSDVETFEPKFSYKGYQYVQIDGYPSELTADDVICYRVSNDMEDTGSFESSDELFNKMHQ
MMITTMKNNMQGKPTDTPVWEKNGWLGDANVALETMTYNFGFVNMLKQFVETMEDCQNEF
DNVPNMVPTQGWGNDNTVVWNSIFVFGVDQMIDTYGNESYLYEQYDAMRKLALKDMEESR
KNGWTWSDGQLADWVSPMGQGDDDQDLKYSESPSEGSGICGTAFAYHLLDVMADLADRIG
KTEDAAEYRAAMEKMYKAFNEKFYDAENQIYRTLTWSQQQNRSRYRQTSQLVPLAYGLVP
EEYKEGVVTNLVNDIKDKNYHLDTGCVGSKFILPVLTDNGYADVAYKVAQQKSYPSWGFM
AERGTSLWEMWETTSRSLGHYFLGTYDEWFYKGVGGIKEMQDGYQTVTIEPALNESLTYA
KAGVSTVRGQLQSNWTLNEDQGTFDIQVPVGTTAEIILPNNDKGQITCNGQLLSENLDGI
HTVSEEDGKVHIKAGSGSYQFETKVKLTSIEKIKLKKAILDAGSLKQLDYEMDAWTEFKA
VLDEASELNSNPDAVQEEVDAMVLKLTDATAELKLHVNKSREALKEAVKNADEKANPVAV
PVKYADAYQEAYDAAKAGCTDVSLTNEQMDQLVVDLAEAETTMNSHSFQNLALNGKVAYS
TSHEDNYWGWGSKLINDGDRKNINKDGEYTGYSSNTGDAKEKDHEEWVSIDLGKVQDINA
VAIYPAIKNASEKNSGYGFPKNFEIQVSENGKDWTAVISKENYPVPSYEPVSFTFESTNA
KYVKLFAKNLNPKSNDHDFYYLQLSEFEVYHSENIIEDIELTSYVAPKSTAVYGEPLVDM
SDIKASINGKVDITGKWTVENQDGTTVDLKNKPETGKYNVKLTFQAPYTYIFSDILAGTA
DDGAKVTVESNGQKLVYSYLTEVVKAAAPVVEDQKMYFVYAAGGNGQISIADLMKQYQPI
VKYAVGNVSDDHKILASDITVDENGLLSFSVNTNGEIDQNAVIPVTVAMKNYEDTVVNVC
IILTDKIPLTVHSSVENVIYTGNPYEGLEIPSAEITETGEPYTGEFIITYNTEDGNAPVK
EGNYTVTVVPADAAYVGQWTGSFTISPALQTVTAGIESPELFWDETTQITGVAAIGSDGN
KMDLAGAEISYSSEDTNIAVVDENGKVSARNAGSTKIIVTIAIGDMVKAGEAAVTVSEIP
AVNPVLASKTTTSVTLETAEGYEYAVQKGNEEPVFSRIAEFKDLEPATSYVFLQRIAATD
THNAGSVSEALEVLTDKEKIQGTIIINGNTKEGEKLTLDTTGIRNKKPGDLSIVWKRGNQ
EIKEVNSTTYTLTKADVGYKISAVVTAKNLEGSLTAVTASNVLPAVTPPPAKVEVDKITL
NRSSVSIMKKKTVKLTANIFPSNASDMSVTFKSSKPSVASVDKNGKVTGKKAGKAVITAT
ASNGKSASCKITVTTDPTKIKLNTNKKTLGRKETYTLKTTLVPSTAVTSKIKFTSSNKKV
ATVDKKGRVKAVKEGTAVITVKTANGKKATCDITVRKAPSSIKLNVGKSKSLKKGKTLKL
KVTRSTGSAGNITFISKNDKVATVSSSGKIKALKKGRAKIIAETYNGKKAEVVIIVK

Enzyme Prediction     

No EC number prediction in MGYG000000287_02539.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	525	1058	1.2e-138	0.998015873015873
CBM67	166	320	3.3e-34	0.9943181818181818
CBM67	332	502	1.5e-31	0.8920454545454546
CBM32	1260	1407	9e-18	0.9354838709677419

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	2.52e-90	643	994	1	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	6.06e-59	346	518	1	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
COG5492	YjdB	1.84e-20	1903	2131	110	329	Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
pfam05592	Bac_rhamnosid	2.94e-20	526	639	1	102	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	4.17e-15	197	322	1	149	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCI59736.1	0.0	33	1410	39	1406
QYJ14959.1	3.21e-243	31	1101	35	1079
AQS56111.1	1.19e-236	89	1101	14	1014
SDU74751.1	1.26e-213	31	1104	44	1089
AZM64016.1	5.45e-208	26	1101	31	1080

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W5M_A	3.01e-146	32	1105	3	1032	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6I60_A	1.78e-133	38	1101	35	939	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
6GSZ_A	6.57e-85	337	1059	134	847	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
6T0Q_A	6.27e-10	156	462	18	317	PleurotusOstreatus Lectin (POL), apo form [Pleurotus ostreatus]
6T1D_A	6.40e-10	156	462	21	320	PleurotusOstreatus Lectin (POL), compelx with melibiose [Pleurotus ostreatus],6T1D_B Pleurotus Ostreatus Lectin (POL), compelx with melibiose [Pleurotus ostreatus],6T1D_C Pleurotus Ostreatus Lectin (POL), compelx with melibiose [Pleurotus ostreatus],6T1D_D Pleurotus Ostreatus Lectin (POL), compelx with melibiose [Pleurotus ostreatus],6T1D_E Pleurotus Ostreatus Lectin (POL), compelx with melibiose [Pleurotus ostreatus],6T1D_F Pleurotus Ostreatus Lectin (POL), compelx with melibiose [Pleurotus ostreatus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q82PP4	4.15e-145	32	1101	3	1028	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KPL4	3.82e-114	30	1100	27	946	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
T2KNB2	4.42e-98	46	1107	47	926	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03	1.64e-72	322	1059	158	879	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KM26	1.40e-14	616	1071	700	1149	Bifunctional sulfatase/alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22250 PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.001280	0.983328	0.000414	0.014314	0.000351	0.000269

TMHMM  Annotations     

start	end
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