CAZyme Information: MGYG000000287_02540

Basic Information

• Species: Robinsoniella sp900539655
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900539655
• CAZyme ID: MGYG000000287_02540
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1885	MGYG000000287_35|CGC1	208010.45	4.9249

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000287	7249439	MAG	Sweden	Europe

• Gene Location: Start: 7893; End: 13550 Strand: +

Full Sequence      

MDRNILCYFANVLCIYFAIQYIVNIIYYLIECILFCGYLMSAEGEKTDMGKKRKKKKLSA
WLIVVCMIMQLFTGLGVEAKEAGGAFAVYGLECESAVNPLGIDEITPKFSWKLESSQRGV
MQTSYQILAATSKENLDAGDYDVWDSTVVESDQSVDVVYGGKALEPGTRYYWKVQVTDNK
GNTAVSTEEAYWETGLMGTPWDAKWIELDMGAAPSPEKYSVEMDFRIIKDDAGIIFAGKD
NSNFLMWQINTFEKKFKGVTSFRPHQWVKGAAACIDEFTIEDVIPVETQKEQHHIKIEVD
GNQITTFIDDTQIDQRTSQYAAYGKLGFRQTYNPGDCDEQAAYDNIVVKDGTGNILFSDN
FDSGINNNFSIGSVNSGELVVSNALGLQNDAKSAAPMYRKDFEVEKQVKKATVYASALGI
YELEMNGQKVGDDLFNPGWTNYELNQDDRNYVMYQAFDVTNMLQDGPNVIGAITGHGWYS
GKLFVGGKERYGKDSKLLCQLEIEYADGEKVRISSDAAWVASGDGPIVSDDFQMGETYDA
TREMSGWSEADFDFQGSWNPVKESGYDGDIVAHMGPGVKVIKEIKPISVKEQSEGTYIFD
LGQNISGFARMNVTGDAGTVVKLRFGEMLQNDNSLYTANLRSAAATDYYTLKGDPNGETW
QPRFTFHGFRYIEVTGYPGVPTVDDITGVAISSLQNTTGSFTTSNKDVNQLQSNITWGQL
DNFISVPTDCPQRDERLGYTGDSQVFVRTAAMNQDVQTFFQKFMMDVTTNQRADGAIADW
TPNYVTPGDGLSGSFGASGWGDGVIIIPWTMYTTYGDTSIIRQSYEGMKGWIRYYQNLET
KDHLVEGCGNNYGDWLSVGANTPIELICTGYYAYSCDLMSKMAEAIGETEDAATYRKLFE
DIKEGFNNAFVDEEGHVGNGTQTSYLMALKFNLLKDDEARKKAAAYLVEDIKNKNWHLST
GFMGVAYLCPMLTEMGYADVAYRLLLQDTYPSWLYSVRAGATTIWERWNSYDYETGQFGD
VGMNSFNHYSLGSVGEWFYNYVAGISYDEKNPGYKHFNLKPYPGGGLSYMDSSFESVYGN
IESSWSYGDVDCFFMNVTIPANSTATIYVPAENKDQVLENGMPADQSEGLTFVKMEDGKA
VFEAGSGQYQFTTVLRKQVVLNIVDDNASQPGMVSINGGEPQKLPIIENVYEGDEITLSA
KPANEVDYSFEKWYGEDFEDESPEITIQINGETKLATMNSRIERENLALLGKADASTSIS
NADWGIQNINDGQLLSVKGSLGFTSNGTNSAEVDHWVEIDLGEDMYFNRVHLYPRSDVFT
DDGKTPSFPKDFSVEICKDGENKYTTIAEYTDYQAPFQKPAVLKWEEGVTARKVRIHVTK
VGKPPAGEINYFQLAEMGIYNQDGLQTEKLNDAIHNAAAYKGKESDYTSSSWKAFNKALK
NAEKALNNENLTQKEIDTAANSLEYSISGLVERADKTALEKAIKDAEAYLSQESKYTSES
FGILKQKLDEAVQVMEQKDAIQEEADEAADGLRSAVNGLVPAGDKQPPSTPGNVKATGIT
EKSVTITWNASTDNTGVEKYLVKNKDNIVSTVTNGTKAEIKGLSPDTAYTFTVYAYDKAG
NVSGGASVTFKTLKKIQVTAVSSVKLNYNSLTIKGKGTKQLKAEVLPENATNKKVSWRSS
NNSVVSVDAKGKVTAKKAGKAIITVKTADGGKEASCRITVNTVKAKKISLNKKSKTVYKG
KTYQLKSSLKPSNATDQVIWTSSNKKVADVSAKGLVKAKKTGEATITAKISGKKKVTCKI
TVKEVKATGVKINLHKKTLKTGKTLQLKATVKPKNSTDTLKWESSNKKAAKVSPKGVVTT
LKKGHTTITVRTPGGKKDVCEITVK

Enzyme Prediction     

EC	3.2.1.40	3.1.1.73

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	589	1108	3.9e-178	0.996031746031746
CBM67	391	565	5.8e-33	0.8920454545454546

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	3.30e-137	698	1042	3	340	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	3.31e-56	406	582	1	172	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	2.16e-42	590	692	1	102	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
COG5492	YjdB	5.78e-26	1622	1798	162	329	Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
pfam17390	Bac_rhamnosid_C	4.78e-18	1044	1115	1	69	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
SDT43572.1	0.0	89	1403	4	1303
SCG46613.1	1.55e-270	49	1154	2	1076
AVT31775.1	5.55e-256	79	1151	34	1076
AVT37932.1	8.14e-255	79	1151	34	1076
SDT43619.1	8.75e-254	73	1152	38	1086

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W5M_A	8.57e-219	85	1155	3	1032	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6I60_A	3.47e-155	74	1151	18	939	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
6GSZ_A	7.88e-134	379	1117	115	854	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
1K85_A	5.69e-15	1548	1632	4	88	ChainA, CHITINASE A1 [Niallia circulans]
6BT9_A	7.06e-10	1532	1662	467	606	ChitinaseChiA74 from Bacillus thuringiensis [Bacillus thuringiensis],6BT9_B Chitinase ChiA74 from Bacillus thuringiensis [Bacillus thuringiensis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q82PP4	6.19e-218	85	1152	3	1029	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2	1.81e-157	385	1151	164	920	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03	8.50e-130	394	1155	168	912	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KPL4	1.42e-99	98	1150	42	946	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
P20533	1.18e-15	1538	1632	455	549	Chitinase A1 OS=Niallia circulans OX=1397 GN=chiA1 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000022	0.000006	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

start	end
15	37
58	77