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CAZyme Information: MGYG000000287_02541

You are here: Home > Sequence: MGYG000000287_02541

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Robinsoniella sp900539655
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900539655
CAZyme ID MGYG000000287_02541
CAZy Family CBM67
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2076 MGYG000000287_35|CGC1 228022.38 4.813
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000287 7249439 MAG Sweden Europe
Gene Location Start: 13704;  End: 19934  Strand: +

Full Sequence      Download help

MRGWLRFISG  ILTMVLMITS  ILPMTVSAAE  NLTPGHEFTA  DWIWSNDARE  AGQWMSFRKT60
FDLDKVPGKV  EAYVAADSKY  WLWINGEMAV  FEGMVKTGPN  RTDMYYDKVD  IAKYLKEGKN120
TIAVQVVYFG  KSGYGFKDSG  KPGFLFDAEF  GEGALSEGTK  IISDTSWKAV  KDPAYGKHNM180
DSNYRLAEPN  IMYDANAELT  GWQGTEFNDS  KWENAVIQAK  AGESPYNDLW  ERPIPQLKVD240
DVVRYTADGT  EGTGTWTEEY  IDSSANDVFT  ALELPDEYNV  SLTFMVDPIK  TTGSNAPYAG300
SMGLAVNMKD  DNNFYMPQVS  MADLNSMQSK  DYANYKPHIR  INGGWDVKGP  FDISSVITGD360
KRFNTKHTMT  VKVDANGFDA  TVDGTDMERV  NTTALKGGSI  GFRNDNMEKV  RIYSLEVKSA420
DNSTVLFKDN  FANDKLGKRM  TQFKKLSGAV  DPEIKADENG  DHYLSQTNAI  IKAGNVKLGE480
GVKRYTIRNA  TNLQGTPYLK  VKAAAGKRID  MYTDTWKEPA  GNGNSVRHAY  ITKDGEQEFE540
ALGWVNGYDV  YFEIPESVEV  LELGFRPSTY  NTTPAGSFTS  EDEDLNLLYK  KSYDTLLVTM600
RDNYMDCPDR  ERAQWWGDAV  NEMQMAFYAM  DSNAGLLYKK  ALNQVLGWKN  GAGQLPTTAP660
NGIDAISELP  MQALAGVMSF  WQYYMYSGDA  QPMTDGYDSL  LAYLKLWSLE  SDGFVSHRGG720
TWDWMDWGDN  PDAKIIEQEW  YYIAAQSVLN  MAQTLDKPEA  DIEFLEERMY  SIESKFDKAF780
WDKSKNAYYR  STGSGKADDR  ANALAVYAGL  APASRYADIE  KLLETQMESS  PYMEKYVLEA840
LYMMGYDDEA  MARTKTRYQE  MIEDEFPTLW  EFWNKNAGTR  NHAWSGGPLT  MMYMFNAGIT900
PLSPAYESFQ  VRPQTAGLKD  ISAEIPSPKG  NIAVTVKETD  SDITLGVTVP  ENTKSADIYV960
PRMDGKQTMV  QLGGQTIYAG  GAVLDLPDGV  TYRDEDNEYV  AFTVEGGTYS  FVSSEYTGEE1020
KEQYDVNVKV  VGQGTIQVDG  ADITVPYQSQ  VNKGEKVTIA  ATPAEGWAIQ  KITGTYPEII1080
SDENSKVPYT  KEITVDRNVN  FTVVFTEIPK  ERHVLTVDAK  GLEYAANVKI  NGVEKRIPFA1140
GAFKEGQEVT  IEAEVLLPLN  YEFSGWSTET  GTTDGNTTKV  TIGREDVDVS  FELTEKVEKI1200
TPVIVTVADK  PGASGSWDKS  KLTDGQRIST  NDSNGFTSDI  YSTKDISKNP  HNIVLDLGEV1260
KSVNQVALFP  RTNAAAGDNL  SCAFPECFKI  YVSTDNKNWQ  LVRSVVDQPN  PRFKEQVYSF1320
ASHDARYIKI  TTTRLGDVAT  DEGSPNNFRV  QLAEIEVYSN  QEVTLPSKDA  LINVLKEADD1380
VRKTEKYLEA  TLATQEIFDE  AYHTAQAVLE  EEDADADKVR  GAEQGMRNAI  DGLIPAPKPI1440
TLVDEVNGIS  IYAEAGVLPD  NVELRTSLIE  AGHEKNETVT  EAMKDVTDKF  TAFDITLWAE1500
NVELSLGENH  VTATMTVPAG  YDTGKLALFY  VSGDGEKTEL  SFTYTDSNKT  DIRFQADLLG1560
SYVLADGAGE  GGDLATLSTI  KASALKPSML  WDETTRVSQI  MAYDTRGQIV  DLTNAVITYD1620
TSNGNVAAVD  ETGLITAKNT  GTAKIFVNVT  LDEMQASGYV  RVTSAEPQIT  NPVKAEAGKD1680
SITLQTADGY  EYALWTGNTG  LVFTENPVFT  GLNPATEYVF  YQRIAANENH  IAGNLSEPLS1740
ITTDKEMMTG  QIILSGTAKE  GETLTVNTSG  IQNPKNLVYV  WKRGDQGIQG  ANGTSYKLTK1800
SDVGQKISVV  VTSEIMSGIF  TATTTEAVKP  AEVTVTGVTL  DKTSMTLEKG  KSAVLNAAVV1860
PANATNQAVT  FKSSKTSVVT  VSQSGKISAK  KAGTAVITAV  SANGKTAVCK  VTVTQKPTGV1920
KLNRASKTLG  VKETYTLKPT  LKPSYASNKK  YTWTSSNKKV  VKVNSKGKLT  AVKEGTATIT1980
VKTSNGKKAI  CKITVKKAPV  KLTLNEKSKT  LKAGRTFALK  AKRSSRSAGK  ITYTSKNPEI2040
ATVNSKGVIK  AVKKGRTIVK  AKLYNGKSAE  IKITVQ2076

Enzyme Prediction      help

No EC number prediction in MGYG000000287_02541.

CAZyme Signature Domains help

Created with Snap1032073114155196227268309341038114112451349145315571660176418681972491954GH7840225CBM67
Family Start End Evalue family coverage
GH78 491 954 2.2e-89 0.9603174603174603
CBM67 40 225 3.3e-39 0.9886363636363636

CDD Domains      download full data without filtering help

Created with Snap1032073114155196227268309341038114112451349145315571660176418681972575893Bac_rhamnosid6H17861991YjdB17632069YjdB65219Bac_rhamnosid_N18361911Big_2
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 3.86e-37 575 893 3 337
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
COG5492 YjdB 7.02e-29 1786 1991 127 329
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
COG5492 YjdB 4.15e-21 1763 2069 29 327
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
pfam08531 Bac_rhamnosid_N 2.93e-13 65 219 1 154
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam02368 Big_2 2.53e-12 1836 1911 1 77
Bacterial Ig-like domain (group 2). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.

CAZyme Hits      help

Created with Snap1032073114155196227268309341038114112451349145315571660176418681972381357AYC36171.1|CBM32|CBM67|GH78381357AXE90460.1|CBM32|CBM67|GH78221357QJT00118.1|CBM32|CBM67|GH78381357QTU58279.1|CBM32|CBM67|GH78221357QEV28934.1|CBM32|CBM67|GH78
Hit ID E-Value Query Start Query End Hit Start Hit End
AYC36171.1 1.66e-191 38 1357 40 1119
AXE90460.1 8.24e-189 38 1357 40 1119
QJT00118.1 5.84e-188 22 1357 30 1119
QTU58279.1 3.97e-185 38 1357 40 1119
QEV28934.1 3.79e-183 22 1357 30 1119

PDB Hits      download full data without filtering help

Created with Snap10320731141551962272683093410381141124513491453155716601764186819725229343CIH_A409613W5M_A572606I60_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3CIH_A 3.43e-21 522 934 269 674
Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482]
3W5M_A 6.57e-19 40 961 138 995
CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6I60_A 9.39e-14 57 260 179 368
Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits      download full data without filtering help

Created with Snap103207311415519622726830934103811411245134914531557166017641868197240961sp|Q82PP4|RHA78_STRAW18331956sp|P33747|Y4160_CLOAB18311913sp|P85991|IGLVP_BPSK9
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q82PP4 3.57e-18 40 961 138 995
Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
P33747 3.47e-08 1833 1956 35 160
Uncharacterized protein CA_P0160 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=CA_P0160 PE=3 SV=2
P85991 6.33e-06 1831 1913 173 257
Ig-like virion protein OS=Serratia phage KSP90 OX=552528 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000274 0.999074 0.000172 0.000185 0.000149 0.000136

TMHMM  Annotations      download full data without filtering help

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